Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0408 ATGGAGGGAACCGGAGGTGGTGGCCCCTCGGCAGTGTCACCTGTGATCCAATGGAAAACTGATGCGTCCAGGCTTTTTCAGTATTATCTGGATAAAACTACTCCTCACCCGGTGTATAGATGGGTTGGAACCCTAGTTGTGGCTGCGATTTATGCTTTGAGGGTTTATTATGTTCAAGGGTTTTATGTTGTTTCTTATGGTTTGGGCATATATCTTTTGAATTTGTTGATTGGGTTCCTATCTCCTCTGGTTGACCCAGAGCTAGAAACTTCGAATGAGGCTTTACTGCCCACAAAAGGTTCAGATGAATTCAAGCCTTTCATTCGCCGTCTCCCTGAGTTTAAGTTCTGGTACTCCATTACAAAGGCTTTCTGTGTGGCATTTGTCTTGACCTTCTTTTCTGCATTTGATGTTCCTGTATTTTGGCCTATATTACTGTGTTACTGGATTGTTTTATTCATCCTTACAATGAAGCGCCAAATCGTACACATGATCAAATACAAGTATGTTCCCTTCAGTATGGGGAAGCAGAAATATGGCGGCAAAAAATCTTTTGCAAGTAGCAGTGGCTCCAATATGGACTGA 585 0.4256 MEGTGGGGPSAVSPVIQWKTDASRLFQYYLDKTTPHPVYRWVGTLVVAAIYALRVYYVQGFYVVSYGLGIYLLNLLIGFLSPLVDPELETSNEALLPTKGSDEFKPFIRRLPEFKFWYSITKAFCVAFVLTFFSAFDVPVFWPILLCYWIVLFILTMKRQIVHMIKYKYVPFSMGKQKYGGKKSFASSSGSNMD* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0408 194 PIRSF AtER_Rer1p 2 190 IPR004932 GO:0016020
Vvi3g0408 194 PANTHER PROTEIN RER1 12 186 IPR004932 GO:0016020
Vvi3g0408 194 Pfam Rer1 family 18 180 IPR004932 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0408 Vvi-Chr3 3384538 3388113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0408 1 192 Miscellaneous Gene Families AT2G21600 72.396 1.87e-105 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0408 - - vvi:100248585 381.719