Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0405 ATGGATTCTTGTTGTGTGACCTTCAAAGCCAAAGCTCATCTGGCAAAAGCAAGCAGAGGTGGACTCAGCAATGGAGATAATGAATTTTGGGGAGAGAGGATCAGGGGCAGTCTGAATAACAGTGGTTGGGTTAGTCAGTTGGCTAAGGGTTTGAAAACTGAGAAGAGGCCCAGAAAGATCAAGCCTGGGGTTGCTTGCTCTGTTATTACATCAAACAATGGCAAAGAGACTGTGACTATTCAAGCACCAATATTTGAAAGAAGAAGAGCAGACCCTAAAAATGTAGCCTCCATCATACTGGGGGGAGGTGCAGGGACTCAACTCTTTCCTCTTACCATCAGACAAGCCACGCCTGCTGTTCCAGTTGGAGGATGCTATAGGCTTATAGATATTCCGATGAGCAACTGTATTAACAGCAACATAAACAAGATATTTATACTCACCCAGTTCAACTCTGCTTCCCTCAATCGTCACATTGCTCGAACATATTTTGGAAATGGAGTGAATTTTGGGGATGGATTTGTAGAGGTTCTTGCTGCCACTCAAACACCAGGGGAGGCAGGAATGAAATGGTTCGAGGGAACTGCCGATGCTGTGAGAAAATTTATTTGGGTATTTGAGGATGCAAAGAACAAGAACATTGAGAATATTCTGATCTTGTCTGGTGATCACCTTTACCGCATGGATTATATGGACTTAGTTCAGAATCACATCGACAGAAAAGCTGATATAACGGTTTCATGTGTACCTGTGGGTGAAAGCCGTGCATCAGATTATGGATTATTGAAGATGGACAACAGAGGCCGAATTATCCAGTTTGCTGAAAAACCCAAGGGTGCTGATCTGAAAGCAATGAAAGTAGATACCACTCGCCTAGGGCTGTCTCCACAAGAAGCCATGAAATCACCATATATTGCATCAATGGGAGTATATGTATTTAAGACAGATATTTTGTTAAATCTTCTGAGATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATCCCCTTAGCTGTGATGGAGCACAATGTCGAGGCATTTTTATTCAGAGACTACTGGGAGGACATTGGAACAATAAAAACATTCTATGAAGCTAACATGGGCCTCACTGAGGAGTTTCCAAAGTTTGAATTTTATAATCCAAAGACTCCCATTTTCACATCTCCTCGGTTCTTGCCACCAACCAAAATTGAGCAATGTCAGGTTGTGGATGCAATCATCTCACATGGGTGTTTCTTGCGTGAGTGTAGTGTCAAACACTCTATAGTGGGTGAACGCTCACGTTTAGACTATGGTGTAGAGCTCAAGGATACCTTGATGATGGGTGCTGACTTTTACCAAACAGAATCAGAAATTGCATCTTTGCTGGCAGAGGGGAACGTTCCAATAGGGATAGGGAGGAATACGAAAATCAGAAACTGTATAATTGACAAGAATGCAAAGATAGGAAAAGACGCCGTCATTGTGAATAAAGATGGTGTTCAAGAAGCAGACAGGCCAGATGACGGATTCTACATTCGATCTGGAATCACCATCATACTGGAGAAGGCAACAATCAAGGATGGCACAGTTATCTAA 1584 0.4249 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQLAKGLKTEKRPRKIKPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAVPVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAATQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDRKADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAMKSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGTIKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSVKHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDKNAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0405 527 FunFam Glucose-1-phosphate adenylyltransferase 77 392 - -
Vvi3g0405 527 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 489 IPR029044 -
Vvi3g0405 527 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 101 120 IPR005836 GO:0005978|GO:0008878
Vvi3g0405 527 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 306 316 IPR005836 GO:0005978|GO:0008878
Vvi3g0405 527 Pfam Nucleotidyl transferase 97 373 IPR005835 GO:0009058
Vvi3g0405 527 Gene3D Hexapeptide repeat proteins 393 527 - -
Vvi3g0405 527 NCBIfam glucose-1-phosphate adenylyltransferase 96 491 IPR011831 GO:0005978|GO:0008878
Vvi3g0405 527 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 52 527 IPR011831 GO:0005978|GO:0008878
Vvi3g0405 527 CDD ADP_Glucose_PP 98 358 - -
Vvi3g0405 527 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 191 199 IPR005836 GO:0005978|GO:0008878
Vvi3g0405 527 SUPERFAMILY Trimeric LpxA-like enzymes 389 527 IPR011004 -
Vvi3g0405 527 CDD LbH_G1P_AT_C 395 521 - -
Vvi3g0405 527 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 83 392 IPR029044 -
Vvi3g0405 527 FunFam Glucose-1-phosphate adenylyltransferase 393 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0405 Vvi-Chr3 3353840 3357769 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0405 K00975 - vvi:100253688 1053.89