Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0398 ATGGCCAGTGACACTGTTGTGAGCCTTCCTAATGGCAATGCCAATATACAGCCTGATCCACAGAGGACGTACCAAGTTGTTGTGGCTGCAACTCGAGATATGGGTATTGGTAAGGATGGGAAACTACCCTGGAGATTGCCTTCTGACATGAAAATTTTCAAGGACATTACTATGACTGTAGCAGATACTGTGAAAAAGAATGCAGTTATAATGGGTAGAAAAACATGGGAAAGTATTCCTCTTGAGCATCGGCCTCTGCCTGGCCGCCTAAATGTTGTTCTGACTCGTTCTGGAAGTTTTGATATTGCAACTGCAGAGAATGTTGTAATATGTGGAAGCATGGCTTCTGCTTTGGAACTATTAGCTGCATCTCCCTATTGTCTGTCCATTGAAAAAGTGTTTGTTATAGGAGGTGGCCAGATACTAAGGGAAGCTCTCAATGCACCTGGATGTGATGCTATCCACATTACAGAAATTGAGACAAGCTTCGAATGTGACACTTTCATCCCTGCTATTGATTCCTTGGTATTTCAGCCTTGGTACTCATCCTTCCCATTGGTGGAAAACAATATTCGTTATTCTTTCATGACTTATGTTCGTGTGAGAAGTTCTGCAGACGAATCCCAAATCCAGAACAATGGTGACAGTGGGTTGGAATCCATTAAATTTGAAGTAAAGAAGTTCTCTTTCTTGCCCAAGATGATCTTTGAGAGGCATGAGGAATACATCTATCTGAGATTGGTTGAAGACATCATCTCAAATGGTGTTCAAAGGGATGATAGGACAGGGACTGGTACTTTATCAAAGTTTGGTTGCCAGATGCGGTTTAATCTACGAAAAACTTTTCCGCTTCTTACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAACTGCTGTGGTTCATCAGTGGCTCAACAAATGCTAAGGTCCTACAGGAAAAGGGAATTCATATATGGGATGGCAATGCATCCAGGGACTACCTTGATAGTATTGGCTTGGCAGACAGGGAAGAGGGTGACTTGGGACCCATATATGGGTTCCAGTGGAGGCACTTTGGTGCTAGCTATATTGACATGCATGCTGACTATACTGGCCAAGGATTTGATCAGTTGTTAGATGTTATTAACAAGATCAAGAATAATCCGAATGATCGACGGATTATCCTCTCAGCTTGGAATCCTTCTGATCTCAAATTGATGGCACTTCCACCCTGCCATATGTTTGCACAGTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAACATGCATGATCGCTCATGTTTGTGACCTTGTTCCTGGTGATTTCATCCATGTTATTGGGGACTCTCATGTTTATCTGACTCATATCAGGCCTCTGCAGGAGCAGCTTCAGAAGCTTCCTAAACCTTTTCCAATTTTGAAGATCAATCCACAGAAGAAGAACATTGATTCTTTTGTGGCAGCTGATTTCCAACTCATAGGTTATGATCCTCATCAGAAAATAGAGATGAAAATGGCGGTATAG 1575 0.4248 MASDTVVSLPNGNANIQPDPQRTYQVVVAATRDMGIGKDGKLPWRLPSDMKIFKDITMTVADTVKKNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATAENVVICGSMASALELLAASPYCLSIEKVFVIGGGQILREALNAPGCDAIHITEIETSFECDTFIPAIDSLVFQPWYSSFPLVENNIRYSFMTYVRVRSSADESQIQNNGDSGLESIKFEVKKFSFLPKMIFERHEEYIYLRLVEDIISNGVQRDDRTGTGTLSKFGCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLADREEGDLGPIYGFQWRHFGASYIDMHADYTGQGFDQLLDVINKIKNNPNDRRIILSAWNPSDLKLMALPPCHMFAQFYVSHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFIHVIGDSHVYLTHIRPLQEQLQKLPKPFPILKINPQKKNIDSFVAADFQLIGYDPHQKIEMKMAV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0398 524 SUPERFAMILY Dihydrofolate reductase-like 21 200 IPR024072 -
Vvi3g0398 524 CDD TS_Pyrimidine_HMase 243 477 IPR023451 -
Vvi3g0398 524 PIRSF DHFR-TS 6 524 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vvi3g0398 524 FunFam Possible thymidylate synthase 235 524 - -
Vvi3g0398 524 PANTHER THYMIDYLATE SYNTHASE 1 47 524 IPR045097 GO:0016741
Vvi3g0398 524 Hamap Thymidylate synthase [thyA]. 241 524 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 23 200 IPR001796 GO:0004146|GO:0046654
Vvi3g0398 524 ProSitePatterns Thymidylate synthase active site. 386 414 IPR020940 GO:0004799|GO:0006231
Vvi3g0398 524 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 222 524 IPR036926 -
Vvi3g0398 524 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 233 524 IPR036926 -
Vvi3g0398 524 Pfam Dihydrofolate reductase 25 200 IPR001796 GO:0004146|GO:0046654
Vvi3g0398 524 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 35 57 IPR017925 GO:0004146
Vvi3g0398 524 Gene3D Dihydrofolate Reductase, subunit A 4 202 IPR024072 -
Vvi3g0398 524 PRINTS Thymidylate synthase family signature 401 416 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 PRINTS Thymidylate synthase family signature 419 445 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 PRINTS Thymidylate synthase family signature 282 303 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 PRINTS Thymidylate synthase family signature 457 474 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 PRINTS Thymidylate synthase family signature 375 394 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 NCBIfam thymidylate synthase 244 524 IPR000398 GO:0004799|GO:0006231
Vvi3g0398 524 CDD DHFR 27 199 IPR001796 GO:0004146|GO:0046654
Vvi3g0398 524 Pfam Thymidylate synthase 243 524 IPR023451 -
Vvi3g0398 524 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 7 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0398 Vvi-Chr3 3295084 3299175 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0398 K13998 - vvi:100267529 1059.28