Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0397 ATGGCGGCTACTAACCTTCTCCCTCAAGCTCCCACTTTCTCCAAATCCCTAAAATACCCTTTAAACCCAAAGTCATTTTCTCCATTTCCCAACTTACTTCTCAGACCCTCCCCTAAAACCCTGACGCTCAAAGCTGTTCTATCCCAAAACCCTGCAAAAACCTTAACCCCAGACGCACAAGCCCAGAAATTTCAGCATTGTTTCAGAAAATCCGAAGATGGGTTTCTCTACTGCGAAGGTCTCAGAGTCCAAGACGTCATGGACCAAGTAGAGAAAAGGCCATTTTACCTGTATAGTAAACCACAAATTACGCGAAATTTTGAAGCTTACAAGGAGGCTTTGGAGGGTTTAAGATCGATTATTGGGTATGCGATTAAAGCCAACAATAATTTGAAGATTTTGGAGCATTTGAGGGAGTTGGGGTGCGGTGCCGTTTTGGTGAGCGGGAACGAGTTGAGGTTGGCTCTTCGAGCTGGGTTTGATCCAACAAGGTGTATCTTTAATGGGAATGGGAAGCTTTTGGAGGATTTGGTGCTAGCTGCCCAAGAAGGTGTCTTTGTCAATGTTGATAGTGAATTTGATTTGGATAATATTATATCAGCTGCAAGAATTGCTGGCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAAATGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATGAGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGGTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGACGAAATCCGAGCTCAAGGCTTTGAAATAAGTTACCTAAATATTGGAGGTGGTCTTGGGATAGATTACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACAGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGAGATCACTTATTGCTAACACTTGCTGCCTAGTTAATCGGGTCACTGGAGTGAAAACTAATGGAACAAAAAATTTTGTTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGTCTTTACGATGCTTATCAACACATAGAACTGGTGTCTCCTCCACCTTCTGATGCTCAGATTTCAACTTTTGATGTGGTGGGCCCTGTTTGCGAATCTGCAGATTTCTTGGGGAAGGATAGAGAACTTCCCACTCCACCTAGGGGAGCTGGCTTGGTTGTTCATGATGCGGGTGCTTACTGCATGAGCATGGCATCAACTTACAATCTCAAGATGCGCCCACCTGAGTACTGGGTTGAAGATGATGGATCCATGTCCAAGATCAGGCATGGAGAGACATTTGAAGACCATGTAAGGTACTTTGAGGGGCTTTGA 1458 0.4424 MAATNLLPQAPTFSKSLKYPLNPKSFSPFPNLLLRPSPKTLTLKAVLSQNPAKTLTPDAQAQKFQHCFRKSEDGFLYCEGLRVQDVMDQVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPPPSDAQISTFDVVGPVCESADFLGKDRELPTPPRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSMSKIRHGETFEDHVRYFEGL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0397 485 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 349 439 IPR022643 GO:0003824
Vvi3g0397 485 SUPERFAMILY Alanine racemase C-terminal domain-like 323 480 IPR009006 GO:0003824
Vvi3g0397 485 Hamap Diaminopimelate decarboxylase [lysA]. 80 483 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 292 307 IPR022657 -
Vvi3g0397 485 Gene3D Alanine racemase 100 345 IPR029066 -
Vvi3g0397 485 FunFam Diaminopimelate decarboxylase 100 345 - -
Vvi3g0397 485 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 82 479 IPR009006 GO:0003824
Vvi3g0397 485 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 102 348 IPR022644 GO:0003824
Vvi3g0397 485 FunFam Diaminopimelate decarboxylase 337 479 - -
Vvi3g0397 485 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 123 141 IPR022653 -
Vvi3g0397 485 SUPERFAMILY PLP-binding barrel 93 349 IPR029066 -
Vvi3g0397 485 CDD PLPDE_III_DapDC 94 460 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 NCBIfam diaminopimelate decarboxylase 70 479 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 143 155 IPR000183 GO:0003824
Vvi3g0397 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 123 141 IPR000183 GO:0003824
Vvi3g0397 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 439 452 IPR000183 GO:0003824
Vvi3g0397 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 256 269 IPR000183 GO:0003824
Vvi3g0397 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 338 357 IPR000183 GO:0003824
Vvi3g0397 485 PANTHER DIAMINOPIMELATE DECARBOXYLASE 63 481 - -
Vvi3g0397 485 PRINTS Diaminopimelate decarboxylase signature 229 238 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 PRINTS Diaminopimelate decarboxylase signature 449 471 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 PRINTS Diaminopimelate decarboxylase signature 366 384 IPR002986 GO:0008836|GO:0009089
Vvi3g0397 485 PRINTS Diaminopimelate decarboxylase signature 141 158 IPR002986 GO:0008836|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0397 Vvi-Chr3 3277657 3286261 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0397 K01586 - vvi:100247076 978.778