Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0396 ATGAGCGACTATTTTTCTGGACCTCTGGAACGAAGCAATAAGCCTGTCAATGAAAAATCCGACATCGAAAACTCCGAGGACGAGAGGAAGAAAAAGATGGGGACTTTCAAGAAGAAGGCAATCACTGCCTCCTCCAAGTTCAGGAATTCTTTGACAAAAAAGGGCCGAAGAAACAGCAAAGTAATGAACATTGCAGTCGAGGAGGATGACCTTGATGCAGAAGAACTACAGGCAGTAGATGCATTTCGCCAAGCACTTATCTTGGAGGAGTTGCTACCCTCAAAACACGATGACTCCCGAGTGATGCTAAGATTCTTGAAGGCCAGGAAATTTGATATTGAAAAAACAAAGCAAATGTGGGCTGATATGATCAATTGGAGGAAGGAGTTTGGCGCTGACACAATCATGGAGGATTTTGAATTCAAGGAAATTGATGATGTCCTTGAATACTACCCACAAGGACATCATGGAGTTGATAAAGATGGGCGGCCTGTTTATATTGAGAGACTTGGTAAAGTCGATCCTGTCAAGCTAATGCAAGTCACAACACTGGAGCGCTATGTGAAATACCATGTACGGGAATTTGAGAGGACCTTCAAAGTCAAGTTCCCAGCTTGCTCAATAGCAGCGAAAAGACACATTGATCAAAGCACCACTATTCTGGATGTGCAAGGAGTGGGACTTAAAAATTTCAACAAATCTGCAAGGGAACTTATTATGCAACTTCAGAAGATAGATGGCGAAAATTATCCTGAGACACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTCATGTGTTGGGTAATAAATACCAGAGCAAGTTGCTTGAAGTAATCGATGCTAGTGAGCTGCCAGAGTTTTTGGGTGGTACTTGTACTTGTGCTGATAAAGGTGGTTGTATGCGTTCGGATAAGGGCCCCTGGAATGATCCAGAAATACTGAAGATGGCTCAAAATTATGACGCCAAAAGCTTTAAGAAAATTTTAATTCCTGTCATCGACGAGAATACGGTTTCTGGGGAAGAGATGGCACATAAGAAATGTGATTCTTTCGACTCAGACATCAGTTTTGACTCAGGAGATAAGTGGTCTCACTCTTCCAGACTTGCAAAGGAGCATGTAGAACATCAACCACTCTCTCCTGTTCAAGAAGAAAAATATCCCAACACAAAGGACTATGGTGGTTATGAGTATGAGGGCTTCATTCAAGTGGTTGACAAGGCTGTGGATGCAACCTGGCCTAAAGCTGTAAACAACAACCCCCAATTTGCCCTTTCTAGAGATTGTTTCCCCACACATGGAGATCCTTGCAGGCCTCAAGGACGAGTAACTGATCAAATTTTCAGTGGGTTGATGAGCTTTGTGGTGGGCATCATCACAATGATCCGCTTGACAAAAAACATGCCAAAGAGGCTCACAGATGCCACCCTTTATTCTACTCCAGACTACTGCGTGGACACAATAGTAAAAAGCCATGCACAACATCCCCAGAAGTCACCAGCACCAGAAGTTTCCAGTGTGGATTACATGTCCATCATCAAGCGTGTAGCTGAAGTGGAAGAAAAGATGAGCGTCCTAAGCATTAAATCCATGGCCATGCTAGCTGAGAAAGAGGAAATGATGAATGCTGCTATAAACCGCGCCAATGCCCTGGAGCAAGAACTGGCAGCAAACAGGAAGGCTCTGGAGGAGGCTCTTATACGACAGGGAGAATTGATGACCTACATCGAGAAGAAGAAGAAGAAGAAAAAGAAGTTTATAAAGAAGTTGAACCCATTCTGCTGGTGA 1851 0.4338 MSDYFSGPLERSNKPVNEKSDIENSEDERKKKMGTFKKKAITASSKFRNSLTKKGRRNSKVMNIAVEEDDLDAEELQAVDAFRQALILEELLPSKHDDSRVMLRFLKARKFDIEKTKQMWADMINWRKEFGADTIMEDFEFKEIDDVLEYYPQGHHGVDKDGRPVYIERLGKVDPVKLMQVTTLERYVKYHVREFERTFKVKFPACSIAAKRHIDQSTTILDVQGVGLKNFNKSARELIMQLQKIDGENYPETLCRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADKGGCMRSDKGPWNDPEILKMAQNYDAKSFKKILIPVIDENTVSGEEMAHKKCDSFDSDISFDSGDKWSHSSRLAKEHVEHQPLSPVQEEKYPNTKDYGGYEYEGFIQVVDKAVDATWPKAVNNNPQFALSRDCFPTHGDPCRPQGRVTDQIFSGLMSFVVGIITMIRLTKNMPKRLTDATLYSTPDYCVDTIVKSHAQHPQKSPAPEVSSVDYMSIIKRVAEVEEKMSVLSIKSMAMLAEKEEMMNAAINRANALEQELAANRKALEEALIRQGELMTYIEKKKKKKKKFIKKLNPFCW* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0396 616 CDD SEC14 144 312 IPR001251 -
Vvi3g0396 616 SUPERFAMILY CRAL/TRIO domain 143 340 IPR036865 -
Vvi3g0396 616 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 601 - -
Vvi3g0396 616 Coils Coil 555 589 - -
Vvi3g0396 616 Gene3D - 131 343 IPR036865 -
Vvi3g0396 616 Pfam CRAL/TRIO domain 149 311 IPR001251 -
Vvi3g0396 616 MobiDBLite consensus disorder prediction 1 34 - -
Vvi3g0396 616 PRINTS Cellular retinaldehyde-binding protein signature 101 123 - -
Vvi3g0396 616 PRINTS Cellular retinaldehyde-binding protein signature 270 289 - -
Vvi3g0396 616 PRINTS Cellular retinaldehyde-binding protein signature 303 312 - -
Vvi3g0396 616 Gene3D - 33 130 - -
Vvi3g0396 616 FunFam SEC14 cytosolic factor 131 343 - -
Vvi3g0396 616 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 143 317 IPR001251 -
Vvi3g0396 616 SMART sec14_4 143 314 IPR001251 -
Vvi3g0396 616 SMART CRAL_TRIO_N_2 98 123 IPR011074 -
Vvi3g0396 616 MobiDBLite consensus disorder prediction 14 34 - -
Vvi3g0396 616 Pfam CRAL/TRIO, N-terminal domain 89 122 IPR011074 -
Vvi3g0396 616 SUPERFAMILY CRAL/TRIO N-terminal domain 67 139 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0396 Vvi-Chr3 3270445 3274533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0396 104 308 Acyl Lipid Metabolism Gene Families AT5G47730 28.986 9.96e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0396 - - vvi:100245225 1179.85