LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0395	ATGTCTGGACCTCTGGATCGATTCGCGAGACCTTGCTTTGAGGGATTCTCTGGTCATGATGAGAGAAGAGAAAGAAAGTCTGATTTTGAAAACTCGGAAGACGAAAGGAGGACAAGAATTGGGTCTCTGAAAAAGAAAGCTATAAACGCATCTACCAAATTTAAACATTCTCTCAAGAAAAAGAGCAGTAGAAGAAAAAGTGATGGTCGAGTCAGCTCCGTATCAATTGAGGATGTTCGGGATGTTGAAGAACTAGAGGCTGTTGATGCTTTTCGACAAGCATTGATTTTAGATGAACTGTTACCTACAAAACATGATGATTATCATATGATGTTAAGGTTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCACATGTGGACTGATATGATTCAGTGGAGGAAGGATTTTGGTGCTGACACAATTTTGGAGGATTTTGAGTTCAAAGAGTTGAATGAGGTGTTGAAATACTATCCCCATGGTCATCATGGTGTGGATAAGGAGGGAAGACCTGTTTACATTGAAAGACTAGGAAAAGTTGATCCTTACAAACTTATGCAAGTTACAACTATGGATCGGTATGTTAAATACCATGTGCAGGAGTTCGAGAAAAGCTTTGCCCTAAAGTTTCCAGCCTGTACTATTGCTGCAAAGAGGCACATAGATTCCAGCACAACTATTTTGGATGTTCAAGGCGTGGGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGACTCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTCATGTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAGATGATGCATAATGGTGACGCACGACGTGCTAGACAGGTTGTAAAAGTTTTAAACAGTGAGGGGAAGGTAATTGCATATGCTAAGCCACAGTACCCAATGCAGATGAAAGGTAGTGATACATCCACAGCAGAATCAGGATCTGAAGCTGAAGATATTGCTTCCCCAAAAATGACTAAGAGTTATTCACAACTGCGGTTGACTCCTGTCCGTGAAGAAGCTAAGGTAGTTGGAAAGGTAAGCTATGCTGGTAGCTTCGGGGGGTATGATGAATATGTTCCCATGGTCGACAAAGCTGTTGATGCAGGTTGGAAGAAGCAAGCTGCTCTTCAAAGGCCTTCCTCATCCAAAGGAACACTCCCCCTACTCGATACTCAAAAGTCTCCAGAAGGAATTCATACTAGGATTCTGTCAGCATTACTGGCATTCTTCATGACCCTTTTCACACTCTTCTGTACTGTGGCCTTGCGTGTAACTAATAAGCTTCCTGATAGAGTGGATCATGATGAAAATATCCCTCAACTCGCCCCTGATGCTACACACAAAGAGGATTTCCGCCCCCCTTCACCGATTCCTGCATTTACAGAGGCAGATCTCCTCTCCTCTGTTTTGAAAAAATTGAGTGAGCTTGAGGAAAAGGTTGATACACTTCAAGCAAAACCATCAGAGATGCCTTATGAGAAAGAGGAATTGCTGAATGCTGCTGTATGCCGTGTTGATGCCCTAGAAGCTGAGTTAATTGCTACCAAAAAGGCCCTGCATGAAGCTCTATTGAGGCAGGAGGAATTGCTTGCTTACATAGACAGTCAGGAAGAAGCTAAGTTTCGGAAGAAGAAGTTTTGCTGGTGA	1881	0.4274	MSGPLDRFARPCFEGFSGHDERRERKSDFENSEDERRTRIGSLKKKAINASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELEAVDAFRQALILDELLPTKHDDYHMMLRFLKARKFDIEKAKHMWTDMIQWRKDFGADTILEDFEFKELNEVLKYYPHGHHGVDKEGRPVYIERLGKVDPYKLMQVTTMDRYVKYHVQEFEKSFALKFPACTIAAKRHIDSSTTILDVQGVGFKNLTKAARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQNKLLEIIDASELPEFLGGTCTCADQGGCLRSDKGPWNNPDILKMMHNGDARRARQVVKVLNSEGKVIAYAKPQYPMQMKGSDTSTAESGSEAEDIASPKMTKSYSQLRLTPVREEAKVVGKVSYAGSFGGYDEYVPMVDKAVDAGWKKQAALQRPSSSKGTLPLLDTQKSPEGIHTRILSALLAFFMTLFTLFCTVALRVTNKLPDRVDHDENIPQLAPDATHKEDFRPPSPIPAFTEADLLSSVLKKLSELEEKVDTLQAKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALLRQEELLAYIDSQEEAKFRKKKFCW*	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0395	626	Gene3D	-	76	139	-	-
	Vvi3g0395	626	Pfam	CRAL/TRIO, N-terminal domain	104	131	IPR011074	-
	Vvi3g0395	626	MobiDBLite	consensus disorder prediction	1	42	-	-
	Vvi3g0395	626	SMART	CRAL_TRIO_N_2	107	132	IPR011074	-
	Vvi3g0395	626	Coils	Coil	544	564	-	-
	Vvi3g0395	626	Gene3D	-	140	352	IPR036865	-
	Vvi3g0395	626	SMART	sec14_4	152	323	IPR001251	-
	Vvi3g0395	626	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	152	326	IPR001251	-
	Vvi3g0395	626	CDD	SEC14	150	321	IPR001251	-
	Vvi3g0395	626	SUPERFAMILY	CRAL/TRIO domain	152	346	IPR036865	-
	Vvi3g0395	626	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	24	614	-	-
	Vvi3g0395	626	FunFam	SEC14 cytosolic factor	140	352	-	-
	Vvi3g0395	626	Pfam	CRAL/TRIO domain	158	320	IPR001251	-
	Vvi3g0395	626	SUPERFAMILY	CRAL/TRIO N-terminal domain	82	148	IPR036273	-
	Vvi3g0395	626	PRINTS	Cellular retinaldehyde-binding protein signature	312	321	-	-
	Vvi3g0395	626	PRINTS	Cellular retinaldehyde-binding protein signature	110	132	-	-
	Vvi3g0395	626	PRINTS	Cellular retinaldehyde-binding protein signature	279	298	-	-
	Vvi3g0395	626	MobiDBLite	consensus disorder prediction	13	42	-	-
	Vvi3g0395	626	Coils	Coil	583	603	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0395	Vvi-Chr3	3261068	3269643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi3g0395	86	317	Acyl Lipid Metabolism Gene Families	AT5G47730	28.862	5.95e-21	92.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0395	-		-	vvi:100252199	1202.96