Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0391 ATGGAGATCACCAGCTTGAGCCAAGCCATGCAGCTACACGCACAAATCCTCAAATCACCTGACCCGAAAAAGCAGACCCGGAACCTCACCCCACTCTTCACCTTCGCTGCACTCTCACCGGCCGGCGACCTCACCTACGCCCACCTCATCCTCAACTCCCTCTCCACTCAAAACTCCTTCTTTCACAACACCATGATTCGAGCCTATTCTCAAACCCCCGACCCGACCCAAGCTCTGCACCTCTTCCTCTCAATGCTCTGCCAACCCACGTCACCCCGACCCGACAAGTTCACGTACCCATTCCTCCTCAAGTCATGCGCCCGATTGAAGCAACCCCGGGTAGGAAAGCAGCTCCATGGGTTGATATACAAGTCGGGCCTAGAATCGGATCGGTACGTGTCGAACGGGTTGATCCATATGTATTCGAGTTGCGGGAAGTCGGGTCGTGCGTACAAGGTGTTCGGGAAAATGCGTGACAGAGATGTGGTGTCTTGGACATCGATGATCGATGGGTTTGTTGATGATGATCGGGCTCTTGAGGCTATAAGGTTGTTTGAGGAAATGGTGGAAGATGGAGTTGAGCCCAATGAGGCAACTGTAGTTTCGGTTCTGAGAGCTTGCGCAGACGCTGGAGCAGTTGGTATGGGGAGGAGAGTTCAAGGGGTTATTGAGGAGAGAAAGATTGGTTTGGAGGCCAATGTGAGAACAGCTCTTATTGACATGTATGCAAAATGCGGGTCCATTGGTAGTGCGAGGAAAGTGTTTGATGGGATTGTGAATAAGGATGTTTTTGCTTGGACTGCTATGATATCTGGCCTTGCTAACCATGGGCTGTGTGAGGAGGCTGTTACTTTGTTTGATCAGATGGAGTCTTTTGGCCTAAGGCCGGATGAGAGGACAATGACTGCAGTTTTATCAGCTTGTAGGAATGCAGGCTGGTTTAGTGAAGGTTTTGCTTATTTTAATAGTATGTGGTGCAAATATGGAATAAAACCGACAATTCAGCACTATGGATGCATGGTAGACCTCCTTGCTCGAACTGGGCATCTAGATGAGGCTGAGGAGTTTATTAGAAAGATGCCCATTGAGCCTGATGTGGTTCTGTGGAGAACCTTGATATGGGCTTCTAAAGTTCATGGTGACATTGATAGAAGTGAGCAGTTGATGAAAGATCGTGGGCTCCTAAAGATGGATTCTGATGATTGTGGGAGTTATGTACTTCTTGGAAATGTCTATGCATCTGCTGGGAAATGGCATGATAAGGCAAAGATGAGAGAGTTAATGAATCAAAAAGGGCTTTCAAAGCCACCAGGGTGTAGCAGGATTGAAGTGGATGGCTTAGTCCATGAATTTGCAGCAGGAGATTCAGGTCACATTGAAGCAGAAAAAATCTATGCAAAATTGGATGAAGTGGAAGAGAGATTGAAAGCAGAAGGGTATCATCCAAAACTCTCAGAGGTTCTGCTTGAAATTGACAACAAGGAGAAAGCTTTTCAACTGCGTCACCATAGTGAAAAGCTTGCTGTTGCTTTTGGACTAATCAAAACTAGTCCAGGGACTGAAATCCGCATTGTGAAAAACTTGCGATCTTGTGAGGACTGCCACTCTGTTTTGAAATTAATCTCAAAGATATACCAACAGGATATAATTGTTAGAGATCGGATCCGCTTCCATCATTTCATTAATGGGGACTGCTCATGTAAGGATTACTGGTAG 1716 0.4662 MEITSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0391 571 Gene3D Tetratricopeptide repeat domain 3 159 IPR011990 GO:0005515
Vvi3g0391 571 Gene3D Tetratricopeptide repeat domain 225 448 IPR011990 GO:0005515
Vvi3g0391 571 Pfam DYW family of nucleic acid deaminases 479 571 IPR032867 GO:0008270
Vvi3g0391 571 NCBIfam pentatricopeptide repeat 163 197 IPR002885 -
Vvi3g0391 571 NCBIfam pentatricopeptide repeat 265 298 IPR002885 -
Vvi3g0391 571 NCBIfam pentatricopeptide repeat 300 333 IPR002885 -
Vvi3g0391 571 Pfam PPR repeat 337 360 IPR002885 -
Vvi3g0391 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi3g0391 571 Pfam PPR repeat family 160 208 IPR002885 -
Vvi3g0391 571 Pfam PPR repeat family 261 308 IPR002885 -
Vvi3g0391 571 Pfam E motif 393 443 IPR046848 -
Vvi3g0391 571 FunFam Pentatricopeptide repeat-containing protein 235 449 - -
Vvi3g0391 571 FunFam Pentatricopeptide repeat-containing protein 60 216 - -
Vvi3g0391 571 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi3g0391 571 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 160 508 IPR046960 GO:0003723|GO:0009451
Vvi3g0391 571 Gene3D Tetratricopeptide repeat domain 160 224 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0391 Vvi-Chr3 3219636 3221351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0391 2 571 Glycoside Hydrolase AT3G49170 36.742 4.18e-129 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0391 - - vvi:100262445 1161.36