Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0390 ATGGTGAAGGAAACTGAATACTACGATATTCTGGGTGTCAGTATCGACGCCTCTGCCTCCGATATAAAAAAGGCTTACTATATCAAGGCGAGGGTAGTTCACCCAGATAAGAATCCTGGAGATCCCAGAGCAGCCCAAAACTTCCAGGTGCTTGGGGAGGCTTATCAGGTTCTAAGTGATCCTGAGAAGCGTGAAGCCTATGACAAGCATGGAAAGGCAGGAGTACAGGAAGACTCCATGCTGGATCCATCAGCTGTCTTTGGCATGGTTTTCGGGAGTGACCTCTTTGAAGACTATGTTGGGCAACTTGCATTGGCTTCTTTGGCATCTGTGGAGGTTGAAGAGAACACAGAAGACCGGACCCAGCAAATTCGAGACAAGATGAGGGCATTACAAAAAGAAAGGGAAGAAAAGCTCATAACAATTCTGAAAAATCGCCTTGAACTATTCATTGATGGTCAAACTGATGAGTTTGTGAATTGGGCAAAGTCAGAAGCTCGCCGTCTCTCAAAAGCTGCTTTTGGTGAGGCTATGCTACACACTGTTGGATATATATACACAAGGAAAGCGGCAAAAGAGCTTGGGAAAGACATAAAATATATGAAGGTGCCATTTTTAGCAGAATGGGTAAGAAACAAAGGACACCAGATAAAATCGCAAGTGATGGCAGCTTCAGGTGCCGTGTCTTTAATTCAAATACAGGAAGAGCTGAAAAAATTGAACCAAGGAGAAAACAAAGAAGAGAACATAATGAAAGTCATTGATGATAAGAAAGATGCCATGCTTAATTCACTTTGGCAGATCAATGTCGTTGATATTGAGTCGACTTTATCACATGTCTGCCAGGCTGTTCTTAAAGACCCTAGTGTTTCAAAGGATGTTCTGAAGCTACGGGCCAAAGCATTAAAAAAACTAGGAACAATTTTCCAAGGTGCCAAGGCTCTTTACAGTAGAGAAAACAGTCTGCGCCATGAAAACGATAAAATCCCAGGAGCTGGGCCATCATCATAG 1011 0.4303 MVKETEYYDILGVSIDASASDIKKAYYIKARVVHPDKNPGDPRAAQNFQVLGEAYQVLSDPEKREAYDKHGKAGVQEDSMLDPSAVFGMVFGSDLFEDYVGQLALASLASVEVEENTEDRTQQIRDKMRALQKEREEKLITILKNRLELFIDGQTDEFVNWAKSEARRLSKAAFGEAMLHTVGYIYTRKAAKELGKDIKYMKVPFLAEWVRNKGHQIKSQVMAASGAVSLIQIQEELKKLNQGENKEENIMKVIDDKKDAMLNSLWQINVVDIESTLSHVCQAVLKDPSVSKDVLKLRAKALKKLGTIFQGAKALYSRENSLRHENDKIPGAGPSS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0390 336 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 325 - -
Vvi3g0390 336 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vvi3g0390 336 CDD DnaJ 6 60 IPR001623 -
Vvi3g0390 336 Pfam DnaJ domain 6 68 IPR001623 -
Vvi3g0390 336 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi3g0390 336 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vvi3g0390 336 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vvi3g0390 336 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vvi3g0390 336 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vvi3g0390 336 Gene3D DnaJ domain 1 86 IPR036869 -
Vvi3g0390 336 SMART dnaj_3 5 63 IPR001623 -
Vvi3g0390 336 Coils Coil 114 134 - -
Vvi3g0390 336 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Vvi3g0390 336 FunFam Chaperone protein dnaJ 10 1 83 - -
Vvi3g0390 336 Pfam X-domain of DnaJ-containing 132 319 IPR026894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0390 Vvi-Chr3 3205743 3213915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0390 7 69 Miscellaneous Gene Families AT1G16680 46.154 1.20e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0390 - - vvi:100267597 646.351