Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0388 ATGGGGTCTGCTTGTTGTGTTGCTGCTAGAGATAGAACAATAACAAATGGACCAAGCTGTGAAGTTATGCAGCATAGAAATGTTCGATATTCACCATCATGGAGCTTCCGATGGGACAACCGAGGGCGTGTAGCAGGTGAAGTTGATACTTCTGCTAGTTGGTTTGCTGATGGCCTGAACAGGAACGGAGGATTGGAAAACAAATCCGAAACAACTTATGCATCAGATGGGGGAAGTCCATTAGAAAACTTTCAAACGCTTACATGGCAGAAGTCACCGGTTTCTGAAGGAACTGCTGGGAATTTGACGACTCCTGCTTCAGATCAATCTATCTCAAGGAATATCTCTGTGGAAGTGAGTGTGGAACATCTGGAGCTTGTTATTGTGAAGGAATCAACTGGATCCCCAGGAGTTTCAGATCCGTCTCCTGCTAAACTCTCACCCGCTTTGCCTTCACCTTCACCAACTTTGCCTTCACCTTCGTCTTTGTCAACATCCCCTGTGTCATCCCAAAGTCATATTCTCCCTGCCACCTCAACCCCATCAAGGTGGTCCAGAGGCTCTCCAGGGCATCATTTATTGCGGCAGGTATCTGATAGCCGAATCCCAGGATTGAAATCACCAAACTACTCAATTTCTGAAGAAAGACCACCCTTTGTGCTCCCTGTATGGAACAATGATTCAATTAGGGGCTCTTATGGTGGGTCTTCAGATGGTTGGTCTATGCATGCTTTTTCTGAACTCATGGCTACTTCCCGTAGAGAAAGGTGGTCTTTTGATAGTGAATCTTTGGGCTTCAACCGTGATAAGATAACCAGGTCTAGTAGCAGAATTTCAGCATCTCCCTCTATCGATCTGCAAACTTGTGGTGTTTGCGCAAAGCTCTTGACTGAGAGATCTTCATGGGGCGGCCAGAAAATTATTGCCAGTAACGAGCTCTCAGTGGTGGCGGTTTTAATTTGTGGCCATGTTTACCATGCGGAGTGCTTGGAGAATATGACAGCTGAAATCAACAAGTATGACCCAGCTTGCCCGGTTTGTACTTTTGGAGAGAAGCAGACTCTAAAGTTGTCTGAGAAAGCTCTGAAAGCAGAAATGGATTTGAAGGCTAAAAACAAGAGATCAAGGAACAGAGTTGTGGATAGTGATCTTGATGGCGAAACTGTTGTATTTGATCATCGAAAAAGTAGTGGACGTGAAGGTAAAGGACCCAAGCTGGGCTCCAGTTCCAGCATGAAGAGCTCCTTAGGAAAGCCTTTCTTGAGGCGGCACTTCTCCTTTGGGTCCAAGGGGACTAAATCCTTCTCAGAGAGTCATCAATCTACTAGAAAGAAGGGATTTTTCTGGGCAAAATCTAGCAGGGAATGA 1368 0.4561 MGSACCVAARDRTITNGPSCEVMQHRNVRYSPSWSFRWDNRGRVAGEVDTSASWFADGLNRNGGLENKSETTYASDGGSPLENFQTLTWQKSPVSEGTAGNLTTPASDQSISRNISVEVSVEHLELVIVKESTGSPGVSDPSPAKLSPALPSPSPTLPSPSSLSTSPVSSQSHILPATSTPSRWSRGSPGHHLLRQVSDSRIPGLKSPNYSISEERPPFVLPVWNNDSIRGSYGGSSDGWSMHAFSELMATSRRERWSFDSESLGFNRDKITRSSSRISASPSIDLQTCGVCAKLLTERSSWGGQKIIASNELSVVAVLICGHVYHAECLENMTAEINKYDPACPVCTFGEKQTLKLSEKALKAEMDLKAKNKRSRNRVVDSDLDGETVVFDHRKSSGREGKGPKLGSSSSMKSSLGKPFLRRHFSFGSKGTKSFSESHQSTRKKGFFWAKSSRE* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0388 455 MobiDBLite consensus disorder prediction 146 160 - -
Vvi3g0388 455 MobiDBLite consensus disorder prediction 391 455 - -
Vvi3g0388 455 ProSiteProfiles Zinc finger RING-type profile. 289 348 IPR001841 -
Vvi3g0388 455 SUPERFAMILY RING/U-box 288 348 - -
Vvi3g0388 455 MobiDBLite consensus disorder prediction 161 186 - -
Vvi3g0388 455 MobiDBLite consensus disorder prediction 429 447 - -
Vvi3g0388 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 349 IPR013083 -
Vvi3g0388 455 PANTHER EXPRESSED PROTEIN 1 353 - -
Vvi3g0388 455 MobiDBLite consensus disorder prediction 132 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0388 Vvi-Chr3 3189387 3192458 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0388 - - vvi:100250419 827.009