Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0384 ATGGAACCCTACTCCTTCACATCCTCAGCCAGCATAGCCCAGAAAACATGGGAACTGGAGAACAACATTGCCTCCATGGACGCCCCCTCAGCCGATTCCGACTCCATCTTCTTCTACGACGATGCTGCTCAGGCAAAGTTCCAGCAGGAGAAGCCCTGGGCCAATGACCCCCACTACTTCAAGCGCGTCAAGATCTCTGCCCTAGCTCTCCTCAAGATGGTCGTCCACGCCCGCTCCGGCGGCAACATCGAGGTCATGGGCCTTATGCAGGGCAAGACCGACGGCGACGCCATTATTGTCATGGACGCCTTCGCTTTGCCCGTTGAAGGCACCGAAACTAGGGTTAATGCTCAGGCCGATGCTTATGAGTATATGGTTGATTATTCCCAGACCAACAAGCAGGCAGGACGGCTGGAAAATGTAGTTGGGTGGTACCACTCTCATCCTGGTTATGGATGCTGGCTTTCGGGTATTGATGTTTCAACACAAATGCTCAACCAACAGTTTCAGGAGCCCTTTCTCGCAGTTGTTATTGATCCAACAAGGACTGTTTCTGCTGGAAAAGTTGAGATTGGAGCATTCAGGACATACCCAGAAGGATACAAGCCTCCAGATGACCCTGTCTCTGAATATCAGACCATTCCTTTGAATAAGATTGAAGACTTTGGTGTACATTGTAAACAGTATTATGCATTGGACATAACATATTTCAAGTCTTCTCTTGATTGTCACCTCTTGGATCTTCTGTGGAATAAATATTGGGTCAACACTTTGTCATCTTCTCCTTTGTTGGGGAATGGAGACTATGTTGCAGGACAAATTTCAGATCTAGCGGAAAAGCTGGAGCAGGCAGAGAATCAATTGGCTCATTCGCGCTTTGGACCCCTAATAGCACCTTCCCAAAGAAAGAAAGAGGAGGAATCTCAACTTGCTAAGATAACTCGAGATAGTGCAAAGATTACTGTTGAGCAAGTGCATGGGCTAATGTCGCAGGTTATCAAGGACATTCTTTTCAACTCTGTGCGCCAGTCTAACAGATCTCGCACTGAGCCATCTGGCCCAGAACCCATGATTGAAACTTGA 1083 0.4792 MEPYSFTSSASIAQKTWELENNIASMDAPSADSDSIFFYDDAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGNIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPSQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNRSRTEPSGPEPMIET* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0384 360 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 60 171 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi3g0384 360 Gene3D Cytidine Deaminase, domain 2 5 265 - -
Vvi3g0384 360 SMART pad1_6 62 199 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi3g0384 360 FunFam COP9 signalosome complex subunit 5 7 265 - -
Vvi3g0384 360 Pfam Cop9 signalosome subunit 5 C-terminal domain 259 339 IPR040961 -
Vvi3g0384 360 SUPERFAMILY JAB1/MPN domain 62 199 - -
Vvi3g0384 360 ProSiteProfiles MPN domain profile. 63 200 IPR037518 -
Vvi3g0384 360 CDD MPN_RPN11_CSN5 52 324 - -
Vvi3g0384 360 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 49 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0384 Vvi-Chr3 3165769 3173790 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0384 K09613 - vvi:100265887 724.931