Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0383 ATGGCGAGCGAAGCAGAAGACGCCGTACGACGTCGTACAACCACCACCGACTACCGTAAGAAGCTGCTCCAGCACAAGGAGCTCGAGTCCAGAGTTCGATCAGTGAGAGAGAATTTGCGGGCTGCCAAAAAGGAATATGCTAAAACTGAAGATGATTTGAAATCGCTTCAGAGTGTTGGGCAAATTATAGGCGAAGTTCTTAGGCCTCTTGACAATGAACGCTTGATAGTGAAAGCAAGCAGTGGACCAAGGTATGTGGTTGGCTGTCGCAGTAAAGTGGACAAGGAAAAACTGACTGCAGGCACCCGTGTAGTTCTTGATATGACTACTCTCACAATTATGCGGGCTCTTCCACGAGAAGTTGATCCAGTTGTATATAACATGCTTCATGAAGACCCAGGTAATGTTAGCTACGCAGCGGTGGGAGGTCTGTCAGATCAGATTCGAGAACTCCGGGAATCCATTGAATTGCCTCTAATGAATCCTGAGCTCTTTATTAGGGTGGGGATTAAGCCTCCCAAGGGTGTTCTTCTCTATGGACCTCCTGGAACAGGCAAGACACTGTTAGCCAGAGCAATTGCGAGCAACATAGATGCTAACTTTTTGAAGGTTGTCTCAAGTGCCATTATTGATAAATATATTGGTGAAAGTGCGAGATTGATAAGGGAGATGTTTGGATATGCACGAGATCACCAACCCTGTATCATTTTTATGGATGAGATTGATGCCATTGGTGGGCGTCGTTTCAGCGAGGGAACAAGTGCTGATCGTGAAATTCAGAGAACACTCATGGAGTTGCTCAACCAGCTGGATGGATTTGATCAGCTTGGGAAGGTCAAAATGATTATGGCAACAAATAGACCTGATGTTCTGGACCCTGCACTTCTTCGTCCTGGGCGACTGGATAGGAAGATAGAAATTCCATTGCCAAATGAACAATCCAGAATGGAAATCCTTAAAATCCATGCTGCTGGAATTGCTAAACATGGTGAAATCGACTATGAAGCTGTTGTAAAGCTGGCTGAGGGGTTTAATGGAGCCGATCTTCGTAATGTTTGCACTGAAGCTGGGATGTCAGCAATTCGTGCAGAACGTGACTATGTCATCCATGAAGATTTCATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACTTGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGACTAA 1200 0.4517 MASEAEDAVRRRTTTTDYRKKLLQHKELESRVRSVRENLRAAKKEYAKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYAAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0383 399 Pfam ATPase family associated with various cellular activities (AAA) 176 309 IPR003959 GO:0005524|GO:0016887
Vvi3g0383 399 Gene3D - 129 309 IPR027417 -
Vvi3g0383 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 384 IPR027417 -
Vvi3g0383 399 Gene3D - 310 380 - -
Vvi3g0383 399 Gene3D - 24 128 IPR012340 -
Vvi3g0383 399 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 20 387 - -
Vvi3g0383 399 ProSitePatterns AAA-protein family signature. 279 297 IPR003960 GO:0005524|GO:0016887
Vvi3g0383 399 FunFam 26S protease regulatory subunit 10B 310 381 - -
Vvi3g0383 399 FunFam 26S protease regulatory subunit 10B 24 128 - -
Vvi3g0383 399 Pfam AAA+ lid domain 332 374 IPR041569 -
Vvi3g0383 399 SMART AAA_5 172 311 IPR003593 GO:0016887
Vvi3g0383 399 Pfam Proteasomal ATPase OB C-terminal domain 63 118 IPR032501 -
Vvi3g0383 399 Coils Coil 25 59 - -
Vvi3g0383 399 FunFam 26S protease regulatory subunit 10B 129 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0383 Vvi-Chr3 3158762 3164698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0383 135 379 Miscellaneous Gene Families AT3G47060 40.000 5.20e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0383 K03064 - vvi:100243563 771.926