Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0380 | ATGGCCTCTCATCAACGCTCTCCTGCAATAAAGGGCGCGAAGGTTTTGATGGTAGGGGCGGGGGGAATAGGGTGCGAGCTTCTCAAGACTCTAGCCCTTTCTGGGTTTGAAGATATTCATATTATTGACATGGACACTATAGAAGTGAGTAACCTTAATAGACAGTTTTTATTTCGGCAATCACATGTTGGGCAATCGAAGGCCAAGGTTGCTCGGGATGCAGTCTTAAGATTTAGGCCTCATATAAGCATTACGTCATATCATGCAAATGTCAAGGACCCTGACTTCAATGTGGACTTCTTTAAGCAATTTAATGTTGTTCTCAATGGTCTTGACAATTTAGACGCGAGGCGACATGTGAACCGCCTTTGCTTGGCATCTGATGTACCTTTGGTTGAAAGTGGAACAACTGGGTTCCTTGGACAGGTTACTGTACATGTGAAGGGTAAAACAGAGTGCTATGAGTGCCAGCCAAAGCCCACTCCAAAGACATATCCCGTCTGTACTATTACTAGTACCCCATCCAAGTTTGTACATTGCATTGTATGGGCAAAAGACCTACTTTTTGCGAAGTTATTTGGAGACAAGAATCAGGAAAATGACCTAAATGCGCGTTCTAGTAATGCTGCCAGCTCATCACAGCAAGCAGAGGATGTTTTTGAACGTCAAAATGATGAAGGCATTGATGAATATGCAAAGCGAATATATGATCATGTGTTTGGTTATAACATTGGAGTTGCTTTATCTAATGAAGAGACTTGGAAAAACCGTAATAGACCAAAGCCCTTATATAGCAGAGATGTCTTTCCTGAGGAACCAAGTCAACAGAATGGAAATATGGATAAAAATTGTGCAACTGATGATCCATTATCAGTGTCTGCCATGGCATCTCTGGGTCTGAAGAATCCACAGGATATATGGAGCCTCCTAGAAAATTCAAGAATCTTTCTTGAGGCTCTCAAACTATTTTTTGGGAAGAGAGAGAAGGAGATCGGAAACCTGAGTTTCGATAAAGATGATCAGTTGGCTGTAGAATTTGTTACTGCTGCAGCGAATATCCGTGCTGCTTCTTTTGGGATTCCATTGCATAGCCTTTTTGAAGCAAAAGGTATCGCTGGGAATATTGTGCACGCTGTTGCAACAACAAATGCTGTTATTGCTGGCTTGATTGTGATTGAGGCAATTAAGGTGCTGCAAAGGGATGCAAACAACTACAGGATGACATATTGTCTTGAACATCCATCGAGAAAGATGCTTCTTATGCCAGTGGAACCATTTGAACCTAACAAATCCTGCTATGTTTGTTCTGAGACACCTTTATTGCTCGAAGTTAATACTCACCGCTCAAAGTTACGGGACTTCGTTGAAAAGATTGTTAAGGCCAAGCTTGGCATGAATTGTCCATTGATTATGCATGGACCAGCTCTTCTTTATGAAGTTGGTGATGATCTTGATAAAGATATGGCAGCCAATTATGCTGCAAACCTTGAGAAGGTGCTATCTGAGCTTCCTTCTCCAGTTACTGGTGGGACTATGCTCACAGTTGAAGACCTTCAACAGGAGTTTACATGCAATATTAATATTAAGCATAGAGAGGAATTTGATGAGGAGAAGGAGCCTGATGGCATGCTACTTTCTGGATGGACACAAGCTCCTAGAGTAGAAAAGGATGACAATAAGACTGTGGGCAACGGTGGGAGCAGTACATCGAATGCATCGTCTGCAATGCCAGTGGAGGCTGAAGAGGATGATGACATAGAGTTCGTTCCCACTGGGAAGAAAAGAAAAGTGGGTGAGATTTCCAAGGCCACCAATCCAAATCTTTCTGATGTTGCTGATGATGATGTTCTTGTCATGCTTGATGGTGAGAATTTGGACATCAACAAGAAGAAAAAGTTGCAATAG | 1905 | 0.422 | MASHQRSPAIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLASDVPLVESGTTGFLGQVTVHVKGKTECYECQPKPTPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNARSSNAASSSQQAEDVFERQNDEGIDEYAKRIYDHVFGYNIGVALSNEETWKNRNRPKPLYSRDVFPEEPSQQNGNMDKNCATDDPLSVSAMASLGLKNPQDIWSLLENSRIFLEALKLFFGKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLQRDANNYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLLLEVNTHRSKLRDFVEKIVKAKLGMNCPLIMHGPALLYEVGDDLDKDMAANYAANLEKVLSELPSPVTGGTMLTVEDLQQEFTCNINIKHREEFDEEKEPDGMLLSGWTQAPRVEKDDNKTVGNGGSSTSNASSAMPVEAEEDDDIEFVPTGKKRKVGEISKATNPNLSDVADDDVLVMLDGENLDINKKKKLQ* | 635 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0380 | 634 | FunFam | SUMO-activating enzyme subunit | 377 | 410 | - | - | |
| Vvi3g0380 | 634 | FunFam | SUMO-activating enzyme subunit 2 | 9 | 185 | - | - | |
| Vvi3g0380 | 634 | FunFam | SUMO-activating enzyme subunit 2 | 1 | 108 | - | - | |
| Vvi3g0380 | 634 | FunFam | SUMO-activating enzyme subunit | 163 | 374 | - | - | |
| Vvi3g0380 | 634 | Pfam | Ubiquitin-activating enzyme, SCCH domain | 326 | 369 | IPR019572 | - | |
| Vvi3g0380 | 634 | Gene3D | - | 2 | 108 | IPR042449 | - | |
| Vvi3g0380 | 634 | Pfam | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain | 442 | 534 | IPR028077 | - | |
| Vvi3g0380 | 634 | MobiDBLite | consensus disorder prediction | 561 | 576 | - | - | |
| Vvi3g0380 | 634 | FunFam | SUMO-activating enzyme subunit | 436 | 590 | - | - | |
| Vvi3g0380 | 634 | Gene3D | - | 436 | 589 | - | - | |
| Vvi3g0380 | 634 | CDD | Uba2_SUMO | 14 | 435 | - | - | |
| Vvi3g0380 | 634 | SUPERFAMILY | Activating enzymes of the ubiquitin-like proteins | 10 | 503 | IPR035985 | GO:0008641 | |
| Vvi3g0380 | 634 | Gene3D | Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 | 163 | 374 | IPR023318 | - | |
| Vvi3g0380 | 634 | PIRSF | SUMO_E1B | 2 | 615 | IPR030661 | GO:0016925|GO:0019948 | |
| Vvi3g0380 | 634 | Pfam | ThiF family | 10 | 433 | IPR000594 | - | |
| Vvi3g0380 | 634 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | - | - | |
| Vvi3g0380 | 634 | PANTHER | UBIQUITIN-ACTIVATING ENZYME E1 | 10 | 495 | IPR045886 | - | |
| Vvi3g0380 | 634 | MobiDBLite | consensus disorder prediction | 552 | 592 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0380 | Vvi-Chr3 | 3142968 | 3150947 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0380 | 334 | 428 | EF-hand Containing Proteins | AT2G30110 | 35.000 | 6.72e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0380 | K10685 | - | vvi:100253801 | 1248.42 |