Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0377 | ATGGCTTCCAATTCCGACAAGGATACTCCGGCGGATGAGAAAACAGGCTCTGCCGAGAATTCCAAGTCTGATTCATCCTCAGGGGAGTCACATTCAGAACAGAGAAGAGCCGCGGCAGCTGCCTCTGTGCCAGGAGCCGGTTTACCTGCTAATCCTTTCGATTTTTCAGCAATGACCGGCCTGCTTAATGATCCAAGCATTAAAGAATTAGCAGAACAGATTGCAAAAGATCCTGCATTCAACCAGATGGCAGAGCAGCTCCAAAAGACTTTTCATGGTGCAGCAGTTGAAGAGAGTATCCCACAGTTTGACACACAACAGTATTATTCCACCATGCAACAAGTTATGCAAAATCCTCAATTTATGACTATGGCTGAGCGTCTTGGTAATGCATTAATGCAGGATCCATCTATGTCCAGCATGCTTGAGAATTTGGCTAATCCAACACACAAGGACCAGCTTGAAGAAAGAATGGCACGCATTAAAGAAGATCCATCATTGAAGCCTATTTTAGATGAGATAGAAACTGGTGGTCCAGCTGCCATGATGAGATACTGGAACGATAAGGATGTCTTGCAGAAGTTGGGTGAAGCAATGGGTCTTGCAGTTTCAGGGGATGCAGCCGCTTCTGCTGATAATTCAGGTCTAGATGAAGCTGAAGAATTGGCAAATGAGGATGAATCAATTGCTCATCATCACAGTGAATCAATTGTTCATGACACTGCTAGTGTTGGTGATGTGGAGGGTTTGAAGAATGCACTTGCCTCTGGTGCCGACAAAGATGAAGAAGATTCAGAGGGAAGGACTGCACTGCATTTCGCATGTGGGTATGGTGAGGTGAAGTGTGCTCAGATCCTTGTTGAGGCTGGAGCAACGGTGGATGCTTTGGATAAGAACAAGAACACTGCTCTTCATTATGCAGCTGGTTATGGCAGGAAGGAGTGTGTAGCACTTCTGCTGGAGAATGGTGCTGCAGTCACTCTCCAAAACATGGATGGCAAGACACCGATCGATGTGGCCAAACTGAACAACCAGCATGAGGTACTGAAGCTGCTTGAGAAGGATGCATTCCTATAA | 1077 | 0.4605 | MASNSDKDTPADEKTGSAENSKSDSSSGESHSEQRRAAAAASVPGAGLPANPFDFSAMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESIPQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMARIKEDPSLKPILDEIETGGPAAMMRYWNDKDVLQKLGEAMGLAVSGDAAASADNSGLDEAEELANEDESIAHHHSESIVHDTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQILVEAGATVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNNQHEVLKLLEKDAFL* | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0377 | 358 | SUPERFAMILY | Ankyrin repeat | 230 | 352 | IPR036770 | - | |
| Vvi3g0377 | 358 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Vvi3g0377 | 358 | FunFam | Ankyrin repeat domain-containing protein 2 | 304 | 355 | - | - | |
| Vvi3g0377 | 358 | ProSiteProfiles | Ankyrin repeat region circular profile. | 299 | 330 | - | - | |
| Vvi3g0377 | 358 | Pfam | STI1 domain | 157 | 200 | IPR041243 | - | |
| Vvi3g0377 | 358 | Gene3D | - | 227 | 303 | IPR036770 | - | |
| Vvi3g0377 | 358 | Pfam | Ankyrin repeats (3 copies) | 243 | 330 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | Gene3D | - | 304 | 355 | IPR036770 | - | |
| Vvi3g0377 | 358 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Vvi3g0377 | 358 | SMART | ANK_2a | 233 | 262 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | SMART | ANK_2a | 299 | 328 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | SMART | ANK_2a | 266 | 295 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 74 | 354 | - | - | |
| Vvi3g0377 | 358 | ProSiteProfiles | Ankyrin repeat profile. | 266 | 298 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | ProSiteProfiles | Ankyrin repeat region circular profile. | 266 | 298 | - | - | |
| Vvi3g0377 | 358 | ProSiteProfiles | Ankyrin repeat profile. | 299 | 331 | IPR002110 | GO:0005515 | |
| Vvi3g0377 | 358 | FunFam | Ankyrin repeat domain-containing protein 2 | 217 | 303 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0377 | 238 | 341 | Acyl Lipid Metabolism Gene Families | AT5G53470 | 35.577 | 6.77e-14 | 70.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0377 | - | - | vvi:100258947 | 657.521 |