Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0375 ATGGAGGCCAGTGCTGGTTTAGTGGCTGGTTCTCACAACCGGAACGAGCTTGTGGTCATCCGTCGTGAGGGAGAAGCTGCCGGTCGGAAGCCATTGGCGAATCTAAGTGGGCAAACATGCCAGATTTGTGGGGATGATGTTGGACTTACTGCGGAGGGAGAGTTGTTTGTGGCCTGCAATGAGTGCGCATTTCCGATTTGCAGGACTTGTTATGAGTACGAGCGCAGCGAAGGAAACCAGGTCTGCCCTCAGTGCAAGACTCGCTTCAAACGTCTCAAGGGATGTGCTAGAGTTGAAGGCGATGAAGAAGAAGATGATGTTGATGACTTGGAGAATGAGTTCAATTTCGTGGGGAGAAGGAGGGATACCCAAGATATGCAGTACATTGCAGAGGGCATGCTTCAGGGCCACATGACTTATGGCCGTGCTGGGGATGCTGACATGCTTCCTCAAGTTGTCAACACCATGCCTACGGTTCCTCTGCTAACCAACGGCCAAATGGTTGATGATATTCCTCCTGAGCACCATGCTTTGGTTCCTTCTTTTCTTGGTGGCGGAGGCAAAAGAATCCACCCTCTTCCTTTCTCTGACCCAGCCTTCCCTGTACAACCTAGGTCCATGGATCCTTCCAAGGACTTGGCTGCTTATGGCTATGGAAGTGTGGCTTGGAAGGAGAGGATGGAAAATTGGAAGCAGAAGCAAGAGAAGCTACAGGTGATGAACGAAAATGGTGGGAAAGATTGGGACAACGATGGGGATGGGCCAGATCTACCCCTGATGGATGAGGCAAGGCAACCATTATCAAGGAAGCTACCTGTTCCATCAAGCCAAATTAATCCATATCGAATGATAATTATAATCCGGCTTGTAGTTCTCGGGTTCTTCTTCCATTATCGGGTCATGCATCCTGTAAATGATGCTTATGCACTGTGGCTTGTATCTGTGATCTGTGAGATTTGGTTTGCCATTTCATGGATTCTTGATCAGTTTCCAAAATGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGCTGTCATTGAGGTATGATAAGGAAGGTCAACCTTCTCAACTTTCTTCAGTTGATATATTTGTCAGTACTGTGGATCCTTTAAAAGAGCCGCCTTTGGTTACTGCAAACACGGTGTTGTCCATTCTGGCTGTGGACTACCCAGTTGACAAGGTTTCCTGTTATGTTTCTGATGATGGTGCTGCCATGTTGACATTTGAAGCCTTGTCTGAAACATCCGAATTTGCGAGAAAGTGGGTGCCTTTCTGCAAGAAATTCAACATTGAGCCACGTGCACCAGAGTTTTATTTTGCTCAGAAGATAGATTATCTTCAGGATAAGGTTTTAACTTCATTTGTTAAGGACCGAAGGGCTATGAAGAGAGAGTATGAGGAATTTAAAGTTCGGATTAATGCCTTGGTTGCCAAAGCTCAAAAGGTCCCAGAAGAAGGGTGGACAATGCAGGATGGGACGCCTTGGCCAGGAAATAATGTCCGTGATCACCCTGGAATGATTCAGGTTTTTCTAGGTCAAAGTGGGGGGCATGACACAGAAGGAAATGAATTACCACGCTTAGTCTATGTGTCCAGAGAAAAGAGACCTGGATTTAATCACCACAAGAAGGCTGGTGCCATGAATGCTCTGGTCCGAGTCTCTGCTGTTCTTACGAATGCACCTTATCTATTGAATTTGGATTGTGATCACTACTTCAACAACAGCAAGGCTCTCAAGGAGGCAATGTGTTTCATGATGGATCCACTGCTGGGAAAGAAAGTGTGCTATGTTCAGTTCCCACAGAGGTTTGATGGGATTGATAGGCATGATCGATATGCTAACCGGAACATTGTATTCTTTGATATCAACATGAAAGGCTTGGACGGAATTCAAGGACCCATTTATGTGGGTACTGGGTGTGTCTTTAGAAGACAGGCATTCTATGGTAATGATGCTCCAAAAACAAAGAAGCCTCCAACAAGGACCTGTAACTGCTGGCCAAACTGGTGCTGTTGTGGTTGCTGTTTCTCTGGAAAGAAGAAAAAGAAAACCACAAAGTCCAAGTCTGAGAAGAAGCAGAAGAAGTTTAGGAGATTGGATTCTGGAGCACCTGTATTTGCTTTAGAGGGCATTGAGGAGGGCATTGAAGGGATTGAGAGTGAGAAGTCAACTATGTTGTCTGAGACGAAATTGGAGAAGAAGTTTGGGCAGTCTCCTGTGTTTGTTGCATCAACTCTTCTTGAGGATGGTGGAACACTGAAAATTGCGAGTCCTGCATCTCTATTAAAGGAAGCTATCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAATGCATTGCCATGGATGGCGATCCATATACTGCATCCCTGACAGGCCAGCTTTTAAAGGGTCCGCACCCATCAATCTTTCTGATCGTCTGCACCAGGTGCTTCGATGGGCCCTTGGTTCCGTTGAAATTTTCTTGAGCAGGCACTGTCCCCTCTGGTATGGGTATGGTGGTGGTCTGAAATGGTTAGAACGTCTTTCTTACATCAACGCAACTGTATATCCATGGACATCAATTCCATTGGTCGCTTATTGTACCTTACCTGCTGTTTGCTTGCTCACAGGCAAATTCATCACTCCAGAGCTAAGCAATGTTGCGAGTTTGTGGTTTTTATCCCTTTTTATCTGTATTTTTGCGACTAGCATCCTGGAAATGAGATGGAGTGGTGTTGGAATTGATGATTGGTGGAGAAATGAGCAGTTTTGGGTCATTGGAGGTGTTTCAGCCCATCTTTTTGCTGTCTTCCAGGGGCTTCTTAAGGTGTTAGCTGGTATTGACACAGATTTCACTGTGACTTCAAAAGCCGGGGATGATGAGGATTTCTCTGAGTTGTATGCATTCAAGTGGACAACATTGCTAATTCCACCTACCACACTTCTGATAATTAACCTGATTGGGGTGGTTGCTGGTGTTTCAAATGCAATTAATAATGGGTACGAGTCCTGGGGACCTCTGTTTGGTAAGCTCTTCTTTGCCTTCTGGGTGATTGTCCATCTCTATCCTTTCCTCAAGGGTCTACTAGGACGGCAGAACAGGACACCCACCATCATCATTGTCTGGTCCATTCTTCTTGCTTCAATCTTCTCCCTTTTGTGGGTCAGGGTTGATCCTTTCTTGGCCAAGTCAGATGGCCCTGTGCTGGAGGAATGCGGGTTAGACTGTCATTAG 3285 0.4572 MEASAGLVAGSHNRNELVVIRREGEAAGRKPLANLSGQTCQICGDDVGLTAEGELFVACNECAFPICRTCYEYERSEGNQVCPQCKTRFKRLKGCARVEGDEEEDDVDDLENEFNFVGRRRDTQDMQYIAEGMLQGHMTYGRAGDADMLPQVVNTMPTVPLLTNGQMVDDIPPEHHALVPSFLGGGGKRIHPLPFSDPAFPVQPRSMDPSKDLAAYGYGSVAWKERMENWKQKQEKLQVMNENGGKDWDNDGDGPDLPLMDEARQPLSRKLPVPSSQINPYRMIIIIRLVVLGFFFHYRVMHPVNDAYALWLVSVICEIWFAISWILDQFPKWLPIDRETYLDRLSLRYDKEGQPSQLSSVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFAQKIDYLQDKVLTSFVKDRRAMKREYEEFKVRINALVAKAQKVPEEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDTEGNELPRLVYVSREKRPGFNHHKKAGAMNALVRVSAVLTNAPYLLNLDCDHYFNNSKALKEAMCFMMDPLLGKKVCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGNDAPKTKKPPTRTCNCWPNWCCCGCCFSGKKKKKTTKSKSEKKQKKFRRLDSGAPVFALEGIEEGIEGIESEKSTMLSETKLEKKFGQSPVFVASTLLEDGGTLKIASPASLLKEAIHVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSIYCIPDRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGLKWLERLSYINATVYPWTSIPLVAYCTLPAVCLLTGKFITPELSNVASLWFLSLFICIFATSILEMRWSGVGIDDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTDFTVTSKAGDDEDFSELYAFKWTTLLIPPTTLLIINLIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQNRTPTIIIVWSILLASIFSLLWVRVDPFLAKSDGPVLEECGLDCH* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0375 1094 CDD mRING-HC-C4C4_CesA 38 88 - -
Vvi3g0375 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 113 IPR013083 -
Vvi3g0375 1094 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Vvi3g0375 1094 Pfam Cellulose synthase 361 1086 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi3g0375 1094 Coils Coil 459 479 - -
Vvi3g0375 1094 FunFam Cellulose synthase 478 652 - -
Vvi3g0375 1094 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 264 1060 - -
Vvi3g0375 1094 FunFam Cellulose synthase 22 113 - -
Vvi3g0375 1094 SUPERFAMILY RING/U-box 26 112 - -
Vvi3g0375 1094 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Vvi3g0375 1094 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 656 IPR029044 -
Vvi3g0375 1094 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 863 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0375 Vvi-Chr3 3070831 3078960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0375 1 1093 Glycosyltransferase AT5G64740 72.222 0.0 1619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0375 K10999 - vvi:100264115 2117.81