Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0374 ATGGATACCGGTGGCAATTCTCTTCCATCTGGAGCTGATGGGGTGAAGAGAAAAGTGTCATATTTCTATGATCCAGAGGTCGGAAATTACTACTATGGGCAGGGTCACCCTATGAAGCCACATAGGATTAGAATGACACATGCTCTCCTAGCCCACTATGGATTGCTTCAACATATGCAGGTTCTGAAGCCGTTTCCTGCCAGAGATAGGGATCTTTGCCGGTTTCATGCAGATGATTACGTATCTTTTCTAAGGGGTATCACCCCTGAAACGCAGCAGGATCAGCTGAGGCAACTAAAGCGTTTTAATGTAGGTGAAGATTGCCCCGTATTTGATGGTCTCTACTCTTTCTGTCAAACTTATGCTGGTGGGTCAGTTGGTGGTGCGGTTAAGCTAAATCATGGTCTCTGTGATATTGCTGTTAACTGGGCTGGTGGACTGCACCATGCTAAGAAGTGTGAGGCTTCTGGATTTTGTTACGTGAATGATATTGTCCTGGCAATCTTGGAGCTTCTTAAACAACATGAGCGTGTTTTGTACGTGGATATCGATATCCATCATGGAGATGGTGTGGAGGAGGCTTTCTACACAACTGACAGGGTGATGACTGTTTCATTTCATAAATTTGGTGATTATTTTCCTGGTACAGGGGATATTCGTGATATTGGATTTGGGAAAGGAAAATATTACTCCCTTAACGTTCCATTAGATGATGGGATTGACGACGAGAGCTACCATTTCTTGTTCAAACCAATAATTGGGAAAGTGATGGAGGTTTTTAGGCCTGGTGCTGTGGTTCTTCAGTGTGGTGCTGACTCCTTATCTGGGGACAGGTTAGGATGCTTCAATCTTTCAATCAAAGGCCATGCAGAGTGCGTTCGGTATATGAGATCATTCAATGTGCCACTATTGCTGCTGGGTGGTGGTGGTTATACCATCAGAAATGTTGCTCGTTGCTGGTGCTATGAGACGGGTGTTGCCCTTGGGATTGAAGTTGATGACAAGATGCCACAACATGAGTACTATGAGTACTTTGGTCCAGACTATACTCTTCATGTTGCCCCTAGTAACATGGAAAATAAAAATTCACACCAAATACTGGATGAAATAAGGGCTAAGCTTCTTGATAATCTGTCAAAACTTCGACATGCACCCAGCGTCCAGTTTCAAGAGAGACCCCCAGATACCGAGCTCCCAGAGGCAGATGAAGACCACGATGATGGAGATGAGAGATGGGATCCAGAGTCCGACATGGAAGTTGATGAAGAGCATAAGCCTCTACCAAGCAGAGTAAAGAGAGAAATTGTGGAACCTGAGGCTAAAGATTCGGACGACAAGAAAGGAGTTGCAGAGCACTCTAGAGGCTTTGATACAGCTGCAGAGGAGACTGCTTGCTCAAAGGCTTCAGATGTGTGTCCTATGCCAATAGATGAACCAAATGTGAAAGTTGAACAAGAGAACTTGAACAAGCCATTTGATCAGCCTGTCCAGATGTACCCAAAGCCATGA 1509 0.448 MDTGGNSLPSGADGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHGLCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGFGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSHQILDEIRAKLLDNLSKLRHAPSVQFQERPPDTELPEADEDHDDGDERWDPESDMEVDEEHKPLPSRVKREIVEPEAKDSDDKKGVAEHSRGFDTAAEETACSKASDVCPMPIDEPNVKVEQENLNKPFDQPVQMYPKP* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0374 502 MobiDBLite consensus disorder prediction 418 458 - -
Vvi3g0374 502 MobiDBLite consensus disorder prediction 400 417 - -
Vvi3g0374 502 FunFam Histone deacetylase 15 392 - -
Vvi3g0374 502 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Vvi3g0374 502 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Vvi3g0374 502 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Vvi3g0374 502 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Vvi3g0374 502 PIRSF HDAC_I_euk 4 464 IPR003084 GO:0004407|GO:0016575
Vvi3g0374 502 Pfam Histone deacetylase domain 36 324 IPR023801 -
Vvi3g0374 502 MobiDBLite consensus disorder prediction 384 461 - -
Vvi3g0374 502 PANTHER HISTONE DEACETYLASE 2-RELATED 7 360 - -
Vvi3g0374 502 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0374 Vvi-Chr3 3062190 3067402 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0374 K06067 - vvi:100241833 1047.34