Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0369 ATGATGCGGGCTTTGCAGGGTAAGGTTTCTAAGGTTGTTTTCTCTGATTGCTTGAAGGATCTTCTCCATTCATCTCATTCTTCTCCCTCCAACCCTTCACCATTGCCGTTGCCTCTACTGTTACGCCGTTTCAGCTCCATTGATGCTTCCAGTAGTACCCGTGGTGCAAGCAGGCGAGAAGATTTGGCAAACAACTCTGATCTCTTCAGTCCATCAACCGAGCCTGATGATGATACGTATGGACGAAAAAGCAGCAGCAGCTGCGGCGGCGGCAGCAGCAGCAATCCTCCTAACCCCATACCCAACAGACCCTTGAGAGGTGAGCAACGAATGAATCGTCCCCCTCCTCATATCCCCCAGAGAAAACTTGGCCTCCCCAAAGACGAGGGAGTTGATAGAGCCTCCCAAGCTTCTCCCTTTAACCAACCCTCGCCTGCAGAAAAGGTGGGTGCCACATTAGAGGACGGTTTTCTTGAAAGATTCAAGCTCGGTGTCCAAAAAAAGGAACGCCCCCAAGAAAGTGCGGCCGCTCAGCCCTCCAGAGAACAAGACGCTAACCATGGCAAAGAGCAGCCGCCCCAAAACGCGGATGAGATTTTCAGGAAAATGAAGGAATCCGGTCTTATTCCCAATGCTGTGGCCATGCTTGATGGCCTCTGCAAAGATGGTTTGGTCCAAGAAGCCATGAAGCTTTTCGGTTTGATGCGGGAGAAGGGTACCATTCCAGAGGTTGTGATATACACTGCTGTGGTTGAGGGCTTCTGCAAGGCCCGGCAGCTTAACGATGCGGTGAGGATTTTCAGGAAAATGCAGAATAATGGCATCTCACCAAATGCCTTTAGTTACACAGTATTGATTAGGGGAATGTATAAAGGTAATAGATTGGACATTGCTGTTGATTTCTGTGTTGAGATGTTGGAGGCTGGTCACTCCCCAAATGTGGCAACATTGGTGGATTTAATCCATGAGTTTTGTAAGGAGAAAGGTGTGGAAGAAGCAAAGAATGTCATTGTAACACTCAAACAGAAAGGATTATTTGTTGATGACAAAGCTGTTAGAGAGTACTTGGACAAGAAAGGACCTCAATCACCATTGGTTTGGGAGGCATTCTTTGGGAAGAAAAGCCCACAGAGATCTTTTTGA 1143 0.4794 MMRALQGKVSKVVFSDCLKDLLHSSHSSPSNPSPLPLPLLLRRFSSIDASSSTRGASRREDLANNSDLFSPSTEPDDDTYGRKSSSSCGGGSSSNPPNPIPNRPLRGEQRMNRPPPHIPQRKLGLPKDEGVDRASQASPFNQPSPAEKVGATLEDGFLERFKLGVQKKERPQESAAAQPSREQDANHGKEQPPQNADEIFRKMKESGLIPNAVAMLDGLCKDGLVQEAMKLFGLMREKGTIPEVVIYTAVVEGFCKARQLNDAVRIFRKMQNNGISPNAFSYTVLIRGMYKGNRLDIAVDFCVEMLEAGHSPNVATLVDLIHEFCKEKGVEEAKNVIVTLKQKGLFVDDKAVREYLDKKGPQSPLVWEAFFGKKSPQRSF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0369 380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Vvi3g0369 380 MobiDBLite consensus disorder prediction 164 194 - -
Vvi3g0369 380 NCBIfam pentatricopeptide repeat 245 279 IPR002885 -
Vvi3g0369 380 NCBIfam pentatricopeptide repeat 214 242 IPR002885 -
Vvi3g0369 380 NCBIfam pentatricopeptide repeat 280 314 IPR002885 -
Vvi3g0369 380 Pfam PPR repeat 214 239 IPR002885 -
Vvi3g0369 380 Pfam PPR repeat family 242 290 IPR002885 -
Vvi3g0369 380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vvi3g0369 380 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 189 352 - -
Vvi3g0369 380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi3g0369 380 MobiDBLite consensus disorder prediction 48 148 - -
Vvi3g0369 380 Gene3D Tetratricopeptide repeat domain 174 360 IPR011990 GO:0005515
Vvi3g0369 380 MobiDBLite consensus disorder prediction 48 73 - -
Vvi3g0369 380 MobiDBLite consensus disorder prediction 82 96 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0369 191 362 Organic Solute Cotransporters AT5G03560 39.306 1.31e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0369 - - vvi:100252103 696.427