Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0365 ATGAGTGCCAGCAGGCAGAGGACCCTCAGTGGAGGGGGTCAGATTGTGTTGGACTATTTGAAGCGAATGCAGGCGGAAAATCCTTCTTTCTATTATGCAGTTCAAGGTGATAATGATCATTCTGCTGGAAATATATTTTGGGCTGATGCAACTTCCAGGATGAACTATAACTATTTTGGAGATGCAGTTACCTTTGACACAACATGCAGAACAAACCGATACAGGGTACCATTGACTGCATTCACAGGGCTGAATCATCATGGCCAGCCAGTTTTGTTTGGCTGTGCATTACTTTTCAATGAATCTGAATCCTCATTTGTTTGGTTGTTCCAATCTTGGCTTAATGCAATGTCTGGACGTGCCCCCGTCTCAATCACCACCGACCCAGACCGGTTCATACAGGTGGCTGTTTCTCAAGTGCTTCCTGAGACCCGTCATCGCTTCTCTAAGTGGGGGATCTTTAGAGAAACACAAGAGAAATTGGCTCACATTTATCAATCGCATCCTACATTTGAACCAGAGTTTCAGAAATGCATTAATGAGACTGAGACAATCGATGAGTTTGAGTCATGTTGGGAATCGCTCCTGGAAAGATACTACCTTATGGATAATGAATGGCTTCAGTCAATGTACAATGCTCGCCAGCAGTGGGTACCAGTCTACATGCGAGATACCTTTTTTGGGGAGATGCATGCAAACAAAGGAAATGAGGGTATGAGCTCATTCTTTGATGGGTATGTGAATGCGGCAACCACCATTCAGATGTTGATCAAACAATATGAGAAAGCTGTAGCAAGTTGGCATGAAAAGGAATTAAAGGCTGATTATGATACGAGCAACACTACTCCAGTTCTGAAGACACCATCTCCTATGGAAAAACAAGCTGCAAACCTTTACACAAGGAAAATATTCATAAAATTCCAAGCAGAATTGGTTGAGACCCTTGCTAATCCTGCAACTAAAATTGATGATTCTGGAACTGTCACCACATATCGAGTTTCCAAATTTGGGGATGATCACAAGGCACACTCTGTTAGGTTCAATGCTTTCGAGATGAAGGCTAGTTGTAGCTGTCAAATGTTTGAATTTTCAGGTATTATTTGTAGGCACATTTTGGCAGTTTTCAGAGCAAAAAATGTTCTTACGCTTCCTTCTCAATATATTTTGAAACGATGGACAAGAAATGCCAAGAGTGGAGCTGTGTTGGATGAACAAGCTTCTGAATTGCCAAGCAATTCTAGGGAGTCTTTAACTGTTCGTTATAACAGTCTACGTCAGGAAGCAATCAAATATGTAGAAGAAGGGGCAAAATCCATACATGTTTATAATGTGGCAATGGATGCTTTACAAGAGGCTGTTAGAAAGGTTGCTGCTGCAAAAAATAAAGGTCCTGGAGCTGCACAAGGTGGCACACTGGCAAATGGAGGCAATCAAGAGATGTGTGCCAGAGAAGAAAATAGAACAGCGCCGTATCAATCTGTGGATGAGAAGGAAAAGAAAATTCGTGACTTGGCTTCTGAGTTGGAGAGTACTAATCAACGATGTGAAGTATATCGAGCTAACCTACTTGCAGTTTTGAAAGATATGGAGGACCAGAAGTTAAAGCTCTCAGTAAAAGTTCAGAATGCAAGGCTTAGTTTGAAGGAGTGA 1650 0.4188 MSASRQRTLSGGGQIVLDYLKRMQAENPSFYYAVQGDNDHSAGNIFWADATSRMNYNYFGDAVTFDTTCRTNRYRVPLTAFTGLNHHGQPVLFGCALLFNESESSFVWLFQSWLNAMSGRAPVSITTDPDRFIQVAVSQVLPETRHRFSKWGIFRETQEKLAHIYQSHPTFEPEFQKCINETETIDEFESCWESLLERYYLMDNEWLQSMYNARQQWVPVYMRDTFFGEMHANKGNEGMSSFFDGYVNAATTIQMLIKQYEKAVASWHEKELKADYDTSNTTPVLKTPSPMEKQAANLYTRKIFIKFQAELVETLANPATKIDDSGTVTTYRVSKFGDDHKAHSVRFNAFEMKASCSCQMFEFSGIICRHILAVFRAKNVLTLPSQYILKRWTRNAKSGAVLDEQASELPSNSRESLTVRYNSLRQEAIKYVEEGAKSIHVYNVAMDALQEAVRKVAAAKNKGPGAAQGGTLANGGNQEMCAREENRTAPYQSVDEKEKKIRDLASELESTNQRCEVYRANLLAVLKDMEDQKLKLSVKVQNARLSLKE* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0365 549 Coils Coil 526 546 - -
Vvi3g0365 549 Coils Coil 494 521 - -
Vvi3g0365 549 Coils Coil 442 462 - -
Vvi3g0365 549 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 457 IPR031052 GO:0006355
Vvi3g0365 549 SMART 26again6 354 381 IPR006564 GO:0008270
Vvi3g0365 549 Pfam SWIM zinc finger 351 379 IPR007527 GO:0008270
Vvi3g0365 549 Pfam MULE transposase domain 63 153 IPR018289 -
Vvi3g0365 549 ProSiteProfiles Zinc finger SWIM-type profile. 331 379 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0365 Vvi-Chr3 3009025 3021028 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0365 - - vvi:100262332 1110.52