Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0362 ATGGACTCTCTGTCAAGCACTGCATCAAAAAAGGCCATACGTAGCCCAGGAGGGTCTTCTGGTTCCCAGAACAATCGTAATTCCAATGGGCAAACGGTGAAATTTGCGAGAAGAACTTCAAGTGGGAGATATGTGAGTCTGTCCAGAGATGATCTTGATATGTCTGGCGAAATACCAGGAGACTACATGAACTACACGGTTCACATTCCTCCAACACCAGACAATCAACCGATGGACACCTCTGTGGCTGTCAAGGCAGAAGAGCAATATGTCTCGAATTCCCTTTTCACAGGGGGGTTCAATAGTGTGACTCGTGCCCATCTCATGGACAAGGTGATTGAATCTGAAGTGACTCATCCTCAAATGGCTGGAGCCAAGGGCTCTGCATGTTCCATGCCTGCTTGTGATGGCAAGGTCATGAAGGATGAGAGAGGAGTTGATGTCACCCCTTGTGCATGCAGGTTCAAAATCTGCAGAGATTGCTATATGGACGCCCTGAAGGATACTGGTTTATGTCCAGGGTGCAAGGAGCCATATAAGATGGGAGACTATGATGATGATGTTCCAGACTTTTCAAGTGGAGCACTACCATTGCCAGCTCCGGATGACCCAAAAGGAAATATGTCAGTGATGAAGAGGAACCAAACCGGAGAGTTTGATCACAACAGGTGGTTGTTTGAGACAAAGGGAACATATGGCTATGGCAATGCATTCTGGCCGCAAGATGGTGGGGACGAGAGGGATGAAGAGTTCCAGGGAGGTGCTATAGAAACTATGGACAAGCCATGGAAGCCTCTCAGCAGGAAAATGCCCGTCCCTGCAGCCATCCTCAGCCCTTACAGGTTGCTGATTGCTGTTCGATTTGTGGTGCTGGGTTTCTTCTTGACATGGAGACTGAGGCATAAAAACGAGGACGCCATCTGGTTATGGTTTATGTCCGTGATATGTGAATTGTGGTTTGGCTTCTCATGGATCCTGGATCAGGTCCCTAAGCTATGTCCCGTCAACCGTTCCACTGACCTCCAGGCCCTCTGGGACAAATTCGACATGCCCTCCCCGACCAACCCCACTGGCCGCTCTGACCTCCCAGCCGTGGACATGTTTGTGTCCACCGCTGATCCTGAGAAAGAGCCTCCTCTTGTCACTGCCAACACTATTCTTTCCATCCTAGCAGTTGATTATCCTGTGGAGAAGATCGCTTGTTACATATCCGACGATGGGGGTGCCCTCCTCACATTCGAGGCCATGGCGGAGGCTTGCAGCTTTGCTGATTTGTGGGTTCCCTTTTGCCGGAAACATGATATTGAGCCAAGGAATCCTGAGAGCTACTTCAGCATAAAGGGAGACCCCACCAAGAACAAGAGCAGGTCTGATTTTGTGAAGGATAGGAGAAAGATCAAGAGGGAGTACGACGAGTTCAAGGTGAGGATCAATGGCCTGCCCGACTCGATCAGGAGAAGATCAGATGCCTTCAATGCGAGAGAGGAGATGAAGATGTTGAAGCACATGAGGGAGAGCGGAGGGGACCCTATGGAGCCGATTAAGGTCCAGAAGGCTACCTGGATGGCTGATGGTACCCACTGGCCTGGAGCTTGGGCGGTCCCTAGCAGAGACCACGCCAAAGGTGACCATGCAGGGATACTACAGGTGATGCTGAAGCCACCCAGTAGTGATGTGCTAATGGGAGGAGCCGACGACAAGATCATCGACTTCACCGACGTAGATATACGCTTACCCATGTTTGTGTACATGTCGCGTGAGAAGCGACAAGGCTACGATCATAACAAGAAAGCAGGCGCCATGAACGCCCTGGTGCGATGCTCTGCAATTTTGTCCAATGGCCCATTTATTCTTAACCTGGACTGTGATCACTACATCTACAACTGCAAAGCCGTGCGTGAAGGAATGTGCTTTATGATGGATAGAGGCGGTGAAAGCATCTGCTACATTCAGTTTCCTCAGAGGTTCGAAGGCATTGATCCCTCCGACCGCTATGCCAATAACAACACTGTGTTTTTCGATGGCAACATGCGTGCCCTGGATGGTGTGCAGGGACCTGTTTATGTGGGGACCGGCTGCATGTTCAGGCGCTTTGCGCTTTATGGGTTTGATCCACCAGACCCTGACAAGGCTCATAAGGTGGGCTCTGAGATGCAAAACTTGGGGCCAAGTGATTTCGACTCTGATCTGGATGTGAACCTCCTGCCCAAGCGCTTTGGAAATTCTACACTTCTGGCTGAGTCTATACCTATTGCTGAGTTCCAAGCCCGCCCCCTTGCTGATCATCCTGCCATCAAGTATGGACGCCGCCCCGGTGCTCTCAGGCAGCCGCGTGAGCCACTTGATGCCTCCGCTGTGGCTGAGGCCGTCTCTGTCATCTCTTGTTGGTATGAGGACAAAACAGAGTGGGGTGACCGGGTGGGTTGGATCTACGGCTCAGTCACAGAAGACGTGGTGACAGGCTACCGCATGCACAACCGTGGCTGGCACTCTGTCTACTGCATCACCAAGCGTGACGCCTTTCGCGGTTCAGCTCCGATCAACCTCACAGACCGGCTCCACCAGGTGCTCCGATGGGCCACAGGCTCCGTGGAGATTTTTTTCTCTAGAAACAATGCCTTTCTGGCCAGCCGCAAGCTCAAGTTTCTCCAGCGTCTGGCTTACCTTAATGTCGGCATCTACCCATTCACCTCCATGTTCCTAGTGGTTTACTGCTTCCTCCCCGCTCTCTCCCTTCTCTCCGGCCACTTCATTGTCCAAACCCTAAATATAGCGTTTCTTTTATACCTGCTGACAATATCCATTTGTCTGATTCTCCTAGCCATCTTGGAGGTGAAATGGTCAGGAGTGGGGTTGGAGGATTGGTGGAGGAATGAGCAGTTTTGGCTCATCTCTGGAACCAGCGCCCACTTGGCTGCTGTGGTGCAAGGCCTTCTAAAAGTGATTGCAGGGATTGAAATCTCTTTCACACTGACTTCCAAGTCTTCAGGAGATGAGAATGAAGACATATACGCAGAGCTGTATCTTGTAAAGTGGACTTCATTGATGATTCCACCGATTGTGATTGGGATGATGAATATACTGGCGATTGCAGTAGCATTTTCTAGGACAATATACAGTGCCATCCCTCAGTGGAGTAAGTTCATAGGTGGGGCTTTCTTCAGCTTCTGGGTGTTGGCTCATTTGTATCCTTTCGCCAAGGGGTTGATGGGGAGGCGAGGGAAGACTCCCACAATTGTGTTTGTCTGGTCTGGTCTCATCGCCATTACACTCTCCTTGCTCTGGATTTCCATCAACCCACCAAAAGGAGCCACTTCAGCAACTCTCAATGGAGGCTTTCAATTCCCATGA 3351 0.5073 MDSLSSTASKKAIRSPGGSSGSQNNRNSNGQTVKFARRTSSGRYVSLSRDDLDMSGEIPGDYMNYTVHIPPTPDNQPMDTSVAVKAEEQYVSNSLFTGGFNSVTRAHLMDKVIESEVTHPQMAGAKGSACSMPACDGKVMKDERGVDVTPCACRFKICRDCYMDALKDTGLCPGCKEPYKMGDYDDDVPDFSSGALPLPAPDDPKGNMSVMKRNQTGEFDHNRWLFETKGTYGYGNAFWPQDGGDERDEEFQGGAIETMDKPWKPLSRKMPVPAAILSPYRLLIAVRFVVLGFFLTWRLRHKNEDAIWLWFMSVICELWFGFSWILDQVPKLCPVNRSTDLQALWDKFDMPSPTNPTGRSDLPAVDMFVSTADPEKEPPLVTANTILSILAVDYPVEKIACYISDDGGALLTFEAMAEACSFADLWVPFCRKHDIEPRNPESYFSIKGDPTKNKSRSDFVKDRRKIKREYDEFKVRINGLPDSIRRRSDAFNAREEMKMLKHMRESGGDPMEPIKVQKATWMADGTHWPGAWAVPSRDHAKGDHAGILQVMLKPPSSDVLMGGADDKIIDFTDVDIRLPMFVYMSREKRQGYDHNKKAGAMNALVRCSAILSNGPFILNLDCDHYIYNCKAVREGMCFMMDRGGESICYIQFPQRFEGIDPSDRYANNNTVFFDGNMRALDGVQGPVYVGTGCMFRRFALYGFDPPDPDKAHKVGSEMQNLGPSDFDSDLDVNLLPKRFGNSTLLAESIPIAEFQARPLADHPAIKYGRRPGALRQPREPLDASAVAEAVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWHSVYCITKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASRKLKFLQRLAYLNVGIYPFTSMFLVVYCFLPALSLLSGHFIVQTLNIAFLLYLLTISICLILLAILEVKWSGVGLEDWWRNEQFWLISGTSAHLAAVVQGLLKVIAGIEISFTLTSKSSGDENEDIYAELYLVKWTSLMIPPIVIGMMNILAIAVAFSRTIYSAIPQWSKFIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWSGLIAITLSLLWISINPPKGATSATLNGGFQFP* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0362 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Vvi3g0362 1116 MobiDBLite consensus disorder prediction 1 37 - -
Vvi3g0362 1116 Pfam Cellulose synthase 365 715 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi3g0362 1116 Pfam Cellulose synthase 728 1104 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi3g0362 1116 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 570 704 IPR029044 -
Vvi3g0362 1116 Pfam RING/Ubox like zinc-binding domain 132 180 - -
Vvi3g0362 1116 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 264 1084 - -
Vvi3g0362 1116 FunFam Cellulose synthase-like protein D4 566 711 - -
Vvi3g0362 1116 FunFam Cellulose synthase-like protein D3 113 195 - -
Vvi3g0362 1116 SUPERFAMILY RING/U-box 125 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0362 Vvi-Chr3 2985909 2990105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0362 15 1100 Glycosyltransferase AT4G38190 83.257 0.0 1925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0362 K20924 - vvi:100267420 2284.22