Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0360 ATGAGGAAGGAGCAGAGAAGGGCAGTGTCTGGGGATGGGGGTTTGACTAACAACTGTAACACGTGCCGGCATCGCTATATATACCAGCTCCCCTCAATTCGCTTCTTCACCCAACTCATAATCCACACACCCTTCATTTCTAGATCTTCTCTTTTTCTTTCTGTGCGATTTTCGCCGCTGGTGAATCCATCTGCAGTCATGGATGTCCGACGGCGACCAGTTGGGTCTGTCGAGGCCAAGCCTAATGGGAAACCCCTTGTGGAGGTTGATGTTGATGTGCATGATCCCATCAAGGCTTCTGATGCACTGCCTCTCCCGCTCTATCTCGCCAACGCGGTCTTCTTTGGGGTTTTCTTCTCCGTCGTCTATTTCCTCCTGACGCGGTGGCGGGAGAAGATCCGTACGTCGACCCCTCTCCACGTCGTCACCTTGTCGGAGATTGCTGCCATCGTTACCTTTATGGGTTCGTGTATTTTTCTTCTGGGGTTCTTTGGGATCGACTTCGTTCAGGGGTTTATCGCCCGCCCTGGTCACGATAATGAGTGGGATGCAGAGGATGATATTATCGTCAAGGAGGACGCTCGCGCCGTCCCCTGCGGCGCCGCGATAGACTGCGCTCCTCCGGTTGTGGCTGTGGCTTCTCCCAAGCCTAAGGTGCCCGTTTCCCCTCCGTCGTCTGAGGAAGACGAGGAAATCATCAAGTCGGTGGTGGCCGGTGCCATTCCTTCGTACTCGCTGGAGTCCAGGCTCGGGGACTGCAGGCGCGCCGCGGCGATCCGCCGCGAGGCGTTGCAGAGGATGACCGGAACGTCGCTGGAGGGGCTGCCGCTGGAGGGTCTCGATTACGAGTCGATTTTGGGGCAGTGCTGTGAGATGCCGGTGGGGTATATTCAAATTCCGGTGGGGATCGCGGGGCCGCTGTTGTTGGATGGAAGAGAGTACTCCATTCCAATGGCGACCACCGAAGGGTGCTTGGTGGCGAGCACCAACAGGGGTTGCAAAGCCATCTACGCCTCTGGTGGCGCCACAAGCGTGTTGTTGAGAGATGCCATGACCAGAGCTCCGGTTGTCAGGTTCGGCACCGCCAAGAGGGCTGCTGAATTGATGTTGTTCCTGGAGAATCCCCTCAACTTCGAGACCTTGGCCCTGGTCTTCAACAGGTCCAGCAGATTCGGGAAGCTCCAGAGCATCAAATGCGCAATTGCAGGGAAGAACCTGTACATCAGATTCTCAAGCAGCACTGGAGATGCAATGGGGATGAACATGATCTCCAAAGGCGTCCAGAATGTTTTGGATTTCCTTCAGAATGATTTCCCCGACATGGATGTCATCGGCATCTCTGGAAATTACTGCTCGGACAAGAAGCCAACTGCAGTGAACTGGATTGAAGGACGTGGGAAATCCGTGGTCTGCGAGGCCATCATCAAGGAGGAGGTGGTGAAGAAGGTGTTGAAGACCAATGTGGCTGCTTTGGTGGAGCTTAACATGCTCAAGAACCTCACTGGTTCTGCCATGGCTGGAGCCCTTGGCGGATTCAACGCCCACGCCAGCAACATTGTCTCTGCAGTCTACATAGCCACAGGCCAAGACCCCGCCCAGAATGTGGAGAGCTCTCACTGTATCACCATGATGGAGGCTGTCAACGATGGAAAAGACCTCCACGTCTCAGTCACCATGCCCTCTATCGAGGTTGGCACAGTTGGAGGTGGCACCCAACTTGCATCTCAGTCAGCTTGTCTGAACCTGCTTGGGGTGAAGGGTGCAAACAAAGAATCGCCGGGAACAAACGCAAGGCTGCTGGCCACCATTGTCGCAGGTTCGGTTCTTGCAGGGGAGCTCTCCCTCATGTCTGCAATTGCAGCTGGACAGCTTGTTAGGAGCCACATGAAATATAACAGGTCCAACAAGGATGTTTCCAAGGCTTGA 1926 0.5493 MRKEQRRAVSGDGGLTNNCNTCRHRYIYQLPSIRFFTQLIIHTPFISRSSLFLSVRFSPLVNPSAVMDVRRRPVGSVEAKPNGKPLVEVDVDVHDPIKASDALPLPLYLANAVFFGVFFSVVYFLLTRWREKIRTSTPLHVVTLSEIAAIVTFMGSCIFLLGFFGIDFVQGFIARPGHDNEWDAEDDIIVKEDARAVPCGAAIDCAPPVVAVASPKPKVPVSPPSSEEDEEIIKSVVAGAIPSYSLESRLGDCRRAAAIRREALQRMTGTSLEGLPLEGLDYESILGQCCEMPVGYIQIPVGIAGPLLLDGREYSIPMATTEGCLVASTNRGCKAIYASGGATSVLLRDAMTRAPVVRFGTAKRAAELMLFLENPLNFETLALVFNRSSRFGKLQSIKCAIAGKNLYIRFSSSTGDAMGMNMISKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPTAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGTNARLLATIVAGSVLAGELSLMSAIAAGQLVRSHMKYNRSNKDVSKA* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0360 641 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 409 423 IPR023076 GO:0004420
Vvi3g0360 641 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 229 633 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 Pfam Hydroxymethylglutaryl-coenzyme A reductase 257 633 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 456 628 - -
Vvi3g0360 641 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 618 631 IPR023076 GO:0004420
Vvi3g0360 641 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 350 466 - -
Vvi3g0360 641 CDD HMG-CoA_reductase_classI 230 633 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi3g0360 641 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 351 466 IPR009023 -
Vvi3g0360 641 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 564 571 IPR023076 GO:0004420
Vvi3g0360 641 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 94 636 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 Gene3D - 221 299 IPR023282 GO:0004420
Vvi3g0360 641 Gene3D - 300 628 IPR023074 GO:0004420
Vvi3g0360 641 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 225 299 - -
Vvi3g0360 641 Gene3D - 350 466 IPR009023 -
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 407 425 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 552 573 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 289 310 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 316 336 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 447 472 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 498 524 IPR002202 GO:0004420|GO:0015936
Vvi3g0360 641 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 229 633 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vvi3g0360 641 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 226 622 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0360 Vvi-Chr3 2970340 2972585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0360 67 641 Lipid Metabolism Gene Families AT1G76490 71.959 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0360 K00021 - vvi:100245191 1191.79