Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0358 ATGGCGAGTTTGGTAGGGTCGCCGTGGATGAAGATTAGGGTGATTCCGGAGGTGGCTCCGCCGATTCTCCGCCGCTCGTCCTCTCTGTTCCGGAGGAGTTTTTCAGTGTCTTGTTCGACTGAAGCGCCTCCGAAGAAGCTCGAAGGGGAGGTTCGCGTTCGTTTCGCTCCTTCTCCCACTGGAAACCTCCATGTTGGTGGCGCGAGGACTGCCCTCTTCAATTACTTGTTCGCCAGGTCCAAAGGTGGGAAGTTTGTTCTTAGGATTGAAGATACTGACCTGGAGAGGTCTACTAAGCAATCAGAGGAAGCTCTGTTGCAGGATCTGTCCTGGCTCGGTCTCCACTGGGATGAAGGTCCTGGTGTTGGTGGAGACTATGGTCCTTATAGGCAGTCTGAAAGGAATTCTTTGTACAAGCAATATGCAGAGAAGCTTTTAGAATCTGGTCATGTTTATCAGTGTTTCTGTTCGAATGAGGAATTAGAAAAGATGAAGGAGATTGCAAAGCTAAAGCAACTGCCTCCAGTATACACAGGAAAGTGGGCCAGTGCGACAGCTGAAGAAGTACAAGAAGAGCTAGAAAGGGGAACTCCTTATACATACAGATTTCGTGTGCCAAAAGAGGGAAGTTTGAAAATTGATGACCTTATCCGTGGCGAAGTTAGATGGAACTTGGATACACTTGGAGATTTTGTGATCATGAGGAGTAACGGACAACCAGTTTACAATTTTTGTGTCACAGTTGATGATGCCACCATGGCTATTTCTCATGTTATTAGAGCAGAAGAACATTTACCAAACACTCTCAGGCAAGCATTGTTGTATAAGGCTCTTGGATTTGCCATGCCTTCGTTTGCACATGTTTCCCTAATCCTTGCACCTGATCGGAGTAAACTATCAAAACGACATGGTGCAACTTCAGTGGGTCAGTTCAAGGAGATGGGGTTCCTGCCTCAGGCAATGGTGAACTACCTTGCACTGCTAGGTTGGGGTGATGGCACTGAAAATGAATTCTTCACCCTAAAGCACCTTGTTGAAAAGTTCTCAATTGATCGTGTTAACAAAGGTGGTGCCATCTTTGATTCCACCAAGTTAAGGTGGATGAATGGTCAGCACTTAAGGTCACTCCCATCAGAAGAGTTGACCAAGCTCATTGGTGAGCGCTGGAAAAACACTGGTATTCTCACTCAGTCAGATGGGCCTTTCATAGAGGAGGCTGTTGCGCTGCTCAAGGACGGGATTGATTTGATAACAGATTCAGACAAGGCCCTCTCTAACTTGCTTTCTTATCCTTTATATGCTACCTTAACCAGTCCTGAAGGCAAACCTGTCTTGGAAGATAAGCTGTCTGAAGTTTCATCCAGCTTGTTAGCCGCCTATGACAGCGGCGAACTTCTCCAAGCCCTTGAGGAAGGCCCTGCTGGCTGGCAGAAGTGGGTGAAGAGCTTTGGCAAATCACTGAAACGCAAGGGGAAATCGCTTTTCATGCCTCTTCGAGTTTTGCTAACCGGAAAACTCCATGGCCCAGACATGGGGGCTAGTGTGCTTTTACTCCACAGAGCTGGGACCTGTGGAGTTGTTGCTCCTCAGGTTGGGTTTGTGACACTGGAAGATAGGTTCAAAATGCTGAGAGAAGTTGAATGGGAAGCATTAAACAAGGATCAGCCTCCTCTGGAGTCTGCTGCTCCAGCAATTAACTGA 1701 0.4738 MASLVGSPWMKIRVIPEVAPPILRRSSSLFRRSFSVSCSTEAPPKKLEGEVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKQSEEALLQDLSWLGLHWDEGPGVGGDYGPYRQSERNSLYKQYAEKLLESGHVYQCFCSNEELEKMKEIAKLKQLPPVYTGKWASATAEEVQEELERGTPYTYRFRVPKEGSLKIDDLIRGEVRWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALLYKALGFAMPSFAHVSLILAPDRSKLSKRHGATSVGQFKEMGFLPQAMVNYLALLGWGDGTENEFFTLKHLVEKFSIDRVNKGGAIFDSTKLRWMNGQHLRSLPSEELTKLIGERWKNTGILTQSDGPFIEEAVALLKDGIDLITDSDKALSNLLSYPLYATLTSPEGKPVLEDKLSEVSSSLLAAYDSGELLQALEEGPAGWQKWVKSFGKSLKRKGKSLFMPLRVLLTGKLHGPDMGASVLLLHRAGTCGVVAPQVGFVTLEDRFKMLREVEWEALNKDQPPLESAAPAIN* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0358 566 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 57 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0358 566 FunFam Glutamate--tRNA ligase, mitochondrial 45 376 - -
Vvi3g0358 566 Gene3D HUPs 43 376 IPR014729 -
Vvi3g0358 566 Gene3D - 436 525 IPR020751 -
Vvi3g0358 566 PRINTS Glutamyl-tRNA synthetase signature 54 66 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 PRINTS Glutamyl-tRNA synthetase signature 83 96 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 PRINTS Glutamyl-tRNA synthetase signature 240 250 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 PRINTS Glutamyl-tRNA synthetase signature 256 264 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 PRINTS Glutamyl-tRNA synthetase signature 68 79 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 NCBIfam glutamate--tRNA ligase 50 520 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vvi3g0358 566 Pfam Anticodon binding domain 396 521 IPR045462 -
Vvi3g0358 566 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 361 521 IPR008925 GO:0000049
Vvi3g0358 566 Hamap Glutamate--tRNA ligase [gltX]. 50 547 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vvi3g0358 566 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 434 527 - -
Vvi3g0358 566 Pfam tRNA synthetases class I (E and Q), catalytic domain 50 367 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vvi3g0358 566 CDD GluRS_core 50 375 IPR033910 GO:0006424|GO:0008270
Vvi3g0358 566 PANTHER GLUTAMATE--TRNA LIGASE 31 543 - -
Vvi3g0358 566 SUPERFAMILY Nucleotidylyl transferase 51 359 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0358 K01885 - vvi:100250310 1127.08