Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0353 ATGAAACCGCCGTTGCGTTACGTGGCTGATCCATCCCCTCTGGTTAACGAGTTCGCCAACTTCTGCCATCAATGGGACCTTCACAGAGCAATGAGAGCCATGGATGCTATGGAAAGACATGGAGTATTTGCTGATGCTATCACGTATTCCGAGCTCATCAAGTGCTGCTCTGCTCGTGGCGCTGTCCAAGAAGGAAAGCGAGTTCACGAGCACATTTTCTGTAAAGGGTATGAGCCCAAAATGTTTGTAGTCAATACCTTACTCAACATGTACGTGAAATTTAACCTCTTGGAAGAGGCCGAGGATCTGTTCGACGAAATGCCTGAAAGAAACGTTGTTTCTTGGACTACTATGATATCTGCCTACTCTAATAAACTCAATGACAAGGCCTTGAAGTGCTTGATTCTAATGTTTAGAGAAGGTGTGAGACCAAATATGTTTACTTACTCTTCAGTTTTGAGAGCATGTGATGGGCTGCCCAACCTTAGGCAGCTCCATTGTGGGATAATCAAGACTGGGTTGGAGTCTGATGTCTTTGTTCGGAGTGCTTTGATTGATGTTTACTCAAAATGGAGTGATTTGGATAATGCATTAGGTGTTTTTGATGAAATGCCCACTAGGGATTTGGTTGTTTGGAACTCAATCATTGGGGGGTTCGCTCAGAATAGTGATGGTAATGAGGCTTTGAATCTTTTCAAGAGGATGAAGAGAGCTGGTTTTCTAGCTGATCAAGCTACTTTGACTAGTGTTTTGAGGGCATGTACTGGTTTAGCTCTGTTAGAATTGGGGAGACAGGTCCATGTTCATGTACTCAAGTTTGATCAAGACCTAATTCTCAACAATGCACTCATCGATATGTACTGCAAGTGTGGCAGCTTGGAGGATGCAAACTCTGCGTTTTCTCGTATGGTCGAGAAAGATGTGATATCTTGGAGCACAATGGTTGCAGGTTTGGCCCAGAATGGTTACAGTCGACAGGCACTGGAATTATTTGAGTCAATGAAAGAGTCAGGGTCTAGACCGAATTATATCACAGTTCTTGGGGTTCTGTTTGCCTGCAGTCATGCTGGGCTGGTAGAGAAGGGATGGTACTATTTTCGATCAATGAAGAAGCTTTTCGGGGTGGATCCTGGAAGAGAACACTATGGTTGCCTGATTGATCTCCTTGGGAGAGCTGGGAGGCTTGATGAAGCAGTTAAGTTAATCCATGAAATGGAATGTGAACCAGATTCAGTAACATGGAGGACTTTGCTGGGTGCCTGCAGGGTTCATAGAAATGTGGATCTAGCTATCTATGCAGCCAAGAAGATCATAGAATTGGAGCCTGAAGATGCAGGAACCTACATACTGTTGTCTAATATATATGCGAATACTCAGAGGTGGGAAGATGTGGCAGAAGTGAGGAAGACCATGACTAACAGAGGAATCAGGAAAACCCCAGGTTGTAGCTGGATTGAAGTGGATAAACAGATTCATGTGTTTATTTTAGGAGATACATCACACCCAAAAATAGAAGAGATTGTCCAGCGTTTGAATGATTTGATAGAGAGAGTAATGGGAGTAGGCTATGTTCCAGACACAAATTTTGTGTTGCAGGACCTTGAGGGGGAGCAGAAGGAAGATTCTCTTCGATACCATAGTGAGAAACTGGCAATCATGTTCGGTCTGATGAACTTGTCAAGGGAGAAAACAGTTAGAATCAGGAAAAATCTAAGGATTTGCGGAGATTGTCATGTGTTTGCAAAAGTGGTATCGAGGATGGAGCATCGGAGCATTGTGATTCGGGACCCCATCCGGTACCATCATTTTCAAGATGGAGTCTGCTCCTGTGGGGATTATTGGTAG 1845 0.439 MKPPLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 382 409 IPR002885 -
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 210 243 IPR002885 -
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 83 113 IPR002885 -
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 281 308 IPR002885 -
Vvi3g0353 614 NCBIfam pentatricopeptide repeat 182 210 IPR002885 -
Vvi3g0353 614 FunFam Putative pentatricopeptide repeat-containing protein mitochondrial 35 161 - -
Vvi3g0353 614 FunFam Pentatricopeptide (PPR) repeat-containing protein 371 533 - -
Vvi3g0353 614 Pfam PPR repeat 374 406 IPR002885 -
Vvi3g0353 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Vvi3g0353 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Vvi3g0353 614 Pfam PPR repeat 182 207 IPR002885 -
Vvi3g0353 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 306 IPR002885 -
Vvi3g0353 614 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 162 263 - -
Vvi3g0353 614 SUPERFAMILY TPR-like 268 466 IPR011990 GO:0005515
Vvi3g0353 614 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 551 IPR046960 GO:0003723|GO:0009451
Vvi3g0353 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi3g0353 614 Pfam E motif 424 486 IPR046848 -
Vvi3g0353 614 Pfam PPR repeat family 208 254 IPR002885 -
Vvi3g0353 614 Pfam PPR repeat family 306 352 IPR002885 -
Vvi3g0353 614 Pfam PPR repeat family 110 156 IPR002885 -
Vvi3g0353 614 FunFam Pentatricopeptide repeat-containing protein mitochondrial 264 370 - -
Vvi3g0353 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Vvi3g0353 614 Gene3D Tetratricopeptide repeat domain 162 261 IPR011990 GO:0005515
Vvi3g0353 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Vvi3g0353 614 Gene3D Tetratricopeptide repeat domain 17 161 IPR011990 GO:0005515
Vvi3g0353 614 Gene3D Tetratricopeptide repeat domain 280 503 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0353 Vvi-Chr3 2921752 2923596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0353 22 614 Glycoside Hydrolase AT3G49170 38.259 1.68e-140 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0353 - - vvi:100265928 1254.2