Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0339 ATGGCGGCGGCGCAGAACCAAGCGCCGAATGTGGATCTCTTCGATGCGTATTTTCGAAGGGCGGATTTGGATCGAGATGGCCGGATTAGTGGCTCCGAGGCCGTCGCCTTCTTCCAGACCACCAATTTGCCTAAGCATGTTCTTGCACAGATATGGACGTATGCAGACCATAACCGGATCGGTTTCCTTGGTCGGGCTGAGTTCTATAATGCTCTTAAACTTGTCACTGTGGCACAAAGCAAGCGTGAGCTAACCCCTGACATTGTGAAGGCAGCATTGTATGGCCCAGCTGCAGCTAAGATACCTGCACCACAGATAAATCTTGCTGCCGCTCCTACACAGATGAATACTGCTGCACCAGCACCAGCACCTGCACCTGCATCTGTCGCTCCAATGGGCTCTGTTGCTCCAACAGCCTCTCAAAACTTTGGGGTTAGAGGGCCACAAGGACCTATAAGTGCAAATGTAAACCAGCAATATTTTCCCCCTCAGGGAAATCAGTTAATGAGGCCTACTCAAACCTTACCTGGTTCTGCTTCACTTCCAGCACAGGGTGCTGCAGTTCAAGGATTCCCTGGTGGAGGCACTATGGCAGGGATGCGCCTTCCAAACTCAAGCATCTCAAATGATTTAGTTGGTGGAAGGACAGGTGGAGCTCCAACAGGAATCATCTCCCAAGTTCCAATCAGAGGGGTTAGTCCCTCCATGTCTCAGGATGGATTTGGGGTTTCTCCATCAGGGCTGACAGCTTCAGTACCATCAAAACCGCAGGTCAGCTCTGGAATCACATCATTAGAACCAGCAGCTAAGAATTCCAAAGCAATGGATGTTACTGGGAATGGGTTTGCTTCTGAATCAATTTTTGGAGGAGATGTGTTTTCCGCCTCCCCGTCTCAACTAAAGCAAGATTCTTCTGTGCATACATCATCATCAGGAAATGCACCCATTTCATCATCCATTGCTCCAGTATCCTCTGGAGCCCTGCCTTCAGTTAAATCAAGGGCCCTTGATTCTCTGCAAAGTTCGCCAATGATACAGCCTGTTGGTGGTCAGCTTCAGCAAGCTCAGCCACTTTCAAAACAGAACCAACAGGTTCCAACTCAGAATTCTTCTGCCTTTATTTCAGCTGGGATTTCACTTGGAACTGAGAATACTGCTTCTAGTCAATCCCAGCTCCCATGGCCAAGGATTACTCAATCTGACATTCAGAAATATACTAAAGTATTTGTGGCAGTAGACACGGACAGAGATGGGAAAATCACTGGTGAACAGGCACGCAATCTGTTCCTGAGTTGGAGATTGCCAAGAGAGGTTTTAAAGCAGGTGTGGGACTTATCCGATCAGGATAATGATAGCATGCTTTCTCTCAGGGAGTTTTGTACTGCACTTTATCTAATGGAGAGGTACAGGGATGGACGTCCGCTTCCAGCTGTGCTTCCAAGCAGCATCTTTGCTGACTTTCCAACCACAGTTCAACCTATGGCTGGATATGGCAGTGCAGCTTGGAGACCTCCATCAGGTTTGCAACAACAACAAGGAATGCCTGTTTCTGGTGCACGGCATGTAACACCTGCAATGGGAGGGAGGCCTCCACTGCCCCATCGGGCTGATGAAGGAAAGCAGACAAATCAACAGAAGTCAAAAGTGCCAGTGTTAGAGAAACATTTTGTGAATCAACTTAGTAAAGAGGAACAAGACATGCTTAACACAAAGTTTCGAGAGGCAGCAGATGCTAATAAAAAGGTAGAAGAATTGGAGAAAGAAATTTTGGATTCTAAAGAGAAAATTGAGTTTTGCCGCACTAAGATGCAGGAACTTGTTTTATACAAAAGCAGATGTGACAACAGACTTAATGAGATCATTGAGAGGGTAGCTGCTGATAAACGCGAGGCTGAAGCCCTGGCCAAGAAATATGAAGAGAAATACAAGCAATCTGGAGATGTAGCCTCTAAATTAACTATTGAAGAAGCTACATTTCGTGATATTCAGGAGAGGAAAATGGAGCTGTATCAGGCAATTCTCAAGATGGAGGAAAATGGCAGTGCTGATGAGAGCATTCAGGTTCGTGCTGATCGTATCCAGTCTGATCTCGATGAGCTAGTGAAAGCTCTTAATGAGCGCTGCAAGAAGTATGGATTATATGTGAAACCAACCACACTTGTCGAGCTTCCCTTTGGCTGGCAACTTGGAATCCAAGAGGGAGCTGCTGATTGGGATGAAGATTGGGATAAGTTTGAAGAGGAAGGATACGTTTTTGTGAAGGAGCTCACTCTTGATGTACAAAATGCCATAGCACCTCCAAAACCAAAGTCTATGCCAGTTGACAAAGAAAAAGCTTCCACAGCTGAAACTCCAACTGCTGCTTCTTCAAGTGTTGATGTTAAATCGGAGGACCCTCCAAGCATGGGTGAACGAGTGGTTGAAAATGGATCAGCATATAGCCAAACTGAGGATTACTCAGCAAGAAGTCCAGGCAGCAGTCCATTAGCAAGGGTGGCAATGGAGAGGAGTCCAGCTGGCAGTCCAGCAGCAAGGACTGCAATGGAGAGAAGTCCAGTGGGCAGCCCAGCAGCAAGGGCTGCATTCGAGAGAAGTCCAGCTGGCAGTCCAGCAGCAAGGACTGCATTTGAAAGAAGTCCTGCTGGCAGTCCAGCAGCAAGGCCTGCATTTGATAGCCCTTCTAGAGAATTTCTTGACTCTCACTTCTTCAAGCCTTTCAGTGAAGATGCCTCACCCCATGCCAAAGACACTCAAAGTGATTATGGAGGTGCAGACTCTTTCCTTTCTGGAGATAAGAGCTTTGATGAACCAACTTGGGGAAAATTTGACACTAATGATGACATGGAGTCAATATGGGGCATGAACTCAATCGGTGCTACTAGCAAGATGGATCATGAGAGACACACAGAAAATTATTTCTTTGGGGACGAGTTTGATCTAAAGCCTATAAGAACAGAGTCATCACAAGCAAGTGGCTCTTTTCCAAAGAAGAGCACGTTTACTTTTGATGATTCTGTACCTAGCACACCACTCTACAGTATAAGCAATTCACCTTCAAGATTCAACGAGGGGTCAGAACACTCTTTTGACCCCTTCTCAAGGTTTGATTCTTTCAAGTCGCATGATTCTGGATTTTTCCAACCACGGGAAACACTTGCAAGATTCGATTCGATGCGCAGTACTGCTGACTATGATCATGGCCATGGGTTTCCATCATCTGATGACTCCGATCCTTTTGGCACCGGGCCCTTTAAGACATCACTGGACAGTCAAACTCCAAGAAGAGGCTCTGATAATTGGAGTGCCTTTTAG 3312 0.4653 MAAAQNQAPNVDLFDAYFRRADLDRDGRISGSEAVAFFQTTNLPKHVLAQIWTYADHNRIGFLGRAEFYNALKLVTVAQSKRELTPDIVKAALYGPAAAKIPAPQINLAAAPTQMNTAAPAPAPAPASVAPMGSVAPTASQNFGVRGPQGPISANVNQQYFPPQGNQLMRPTQTLPGSASLPAQGAAVQGFPGGGTMAGMRLPNSSISNDLVGGRTGGAPTGIISQVPIRGVSPSMSQDGFGVSPSGLTASVPSKPQVSSGITSLEPAAKNSKAMDVTGNGFASESIFGGDVFSASPSQLKQDSSVHTSSSGNAPISSSIAPVSSGALPSVKSRALDSLQSSPMIQPVGGQLQQAQPLSKQNQQVPTQNSSAFISAGISLGTENTASSQSQLPWPRITQSDIQKYTKVFVAVDTDRDGKITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCTALYLMERYRDGRPLPAVLPSSIFADFPTTVQPMAGYGSAAWRPPSGLQQQQGMPVSGARHVTPAMGGRPPLPHRADEGKQTNQQKSKVPVLEKHFVNQLSKEEQDMLNTKFREAADANKKVEELEKEILDSKEKIEFCRTKMQELVLYKSRCDNRLNEIIERVAADKREAEALAKKYEEKYKQSGDVASKLTIEEATFRDIQERKMELYQAILKMEENGSADESIQVRADRIQSDLDELVKALNERCKKYGLYVKPTTLVELPFGWQLGIQEGAADWDEDWDKFEEEGYVFVKELTLDVQNAIAPPKPKSMPVDKEKASTAETPTAASSSVDVKSEDPPSMGERVVENGSAYSQTEDYSARSPGSSPLARVAMERSPAGSPAARTAMERSPVGSPAARAAFERSPAGSPAARTAFERSPAGSPAARPAFDSPSREFLDSHFFKPFSEDASPHAKDTQSDYGGADSFLSGDKSFDEPTWGKFDTNDDMESIWGMNSIGATSKMDHERHTENYFFGDEFDLKPIRTESSQASGSFPKKSTFTFDDSVPSTPLYSISNSPSRFNEGSEHSFDPFSRFDSFKSHDSGFFQPRETLARFDSMRSTADYDHGHGFPSSDDSDPFGTGPFKTSLDSQTPRRGSDNWSAF* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 907 929 - -
Vvi3g0339 1103 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 833 893 - -
Vvi3g0339 1103 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Vvi3g0339 1103 PANTHER EH DOMAIN 2 1057 - -
Vvi3g0339 1103 SMART eh_3 2 98 IPR000261 GO:0005515
Vvi3g0339 1103 SMART eh_3 393 489 IPR000261 GO:0005515
Vvi3g0339 1103 Coils Coil 617 641 - -
Vvi3g0339 1103 SUPERFAMILY EF-hand 392 486 IPR011992 -
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 1079 1103 - -
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 238 264 - -
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 525 547 - -
Vvi3g0339 1103 CDD EH 14 80 IPR000261 GO:0005515
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 298 326 - -
Vvi3g0339 1103 SMART efh_1 13 41 IPR002048 GO:0005509
Vvi3g0339 1103 SMART efh_1 47 75 IPR002048 GO:0005509
Vvi3g0339 1103 SMART efh_1 438 466 IPR002048 GO:0005509
Vvi3g0339 1103 SMART efh_1 404 432 IPR002048 GO:0005509
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 764 806 - -
Vvi3g0339 1103 Pfam Cytoskeletal-regulatory complex EF hand 395 466 IPR000261 GO:0005515
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 342 367 - -
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 782 796 - -
Vvi3g0339 1103 SUPERFAMILY EF-hand 10 93 IPR011992 -
Vvi3g0339 1103 MobiDBLite consensus disorder prediction 1063 1103 - -
Vvi3g0339 1103 Coils Coil 568 602 - -
Vvi3g0339 1103 ProSiteProfiles EH domain profile. 401 490 IPR000261 GO:0005515
Vvi3g0339 1103 Gene3D - 379 485 - -
Vvi3g0339 1103 Gene3D - 7 100 - -
Vvi3g0339 1103 CDD EH 405 470 IPR000261 GO:0005515
Vvi3g0339 1103 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Vvi3g0339 1103 Pfam EF hand 15 33 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0339 Vvi-Chr3 2833989 2846646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0339 7 849 EF-hand Containing Proteins AT1G20760 48.652 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0339 K12472 - vvi:100854676 2105.87