Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0335 ATGGGTAAGGTAGTGGAGGAGAAGAAGAAGAAGAAGAAGGGGAGGCCGTCTCTGTTGGATCTTCAGAAGCGGAGTATCAAGCAAGAGCAAGAGCAAGAGCAGCTTCAACAGCAGAAGCAGAATTCTAATTCTAACCCTAACCCTAATTTGAAGTCTAGTACGGTTAGTTCTACGCCCGTCCGCCGATCCACTCGCCGGAACCCTAACCCTGACCCAGAGGAGGACGAAAACGATACCGTCGCCGCCGCCGAAGACGAGGAGGAATTGAGCGGGAGGAGGAGGGAGAAGAAACTGAAACTGGTACTGCGCTTGCCCTCGCAGTTGAATTCAGCGTCTCTGAATTCGGCGTCCTGCGGGTCGGATTCGAACGCGGAGGAGGAGAACGTTCCGGCCAGTCACAAGAAGCGGAAGATCAATGCGATCGGGGATGGATCCGGGCACGTGGACAGTGAAAAGGCAGAAAAGCCTATTTCTGGTGCAAGCAACCAACAAGGGACTGAGTTGGATGGTGGACCGGCTACCCCTTTACCCGATAAAAAGTTATTGGTGTTCGTCCTTGACAGACTTCAAAAGAAAGACTCTTATGGGGTTTTCTCAGAACCAGTGGACCCAAAAGAGCTTCCAGACTACCATGAAGTCATAGAGCATCCAATGGATTTCGGAACCGTTAGGAAGAATCTTGCTGGTGGAGCTTATGCCAGTTTGGAACAATTTGAGGTTGGTTTAGCATTTATGTGCTTGTTAACATCTCTTCTCTTACCCCTTATCTTCCCTTCTCTATTTTTGCGCAGGGTACTGAGTCACTTCTAG 810 0.5 MGKVVEEKKKKKKGRPSLLDLQKRSIKQEQEQEQLQQQKQNSNSNPNPNLKSSTVSSTPVRRSTRRNPNPDPEEDENDTVAAAEDEEELSGRRREKKLKLVLRLPSQLNSASLNSASCGSDSNAEEENVPASHKKRKINAIGDGSGHVDSEKAEKPISGASNQQGTELDGGPATPLPDKKLLVFVLDRLQKKDSYGVFSEPVDPKELPDYHEVIEHPMDFGTVRKNLAGGAYASLEQFEVGLAFMCLLTSLLLPLIFPSLFLRRVLSHF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0335 269 MobiDBLite consensus disorder prediction 127 154 - -
Vvi3g0335 269 MobiDBLite consensus disorder prediction 105 126 - -
Vvi3g0335 269 MobiDBLite consensus disorder prediction 31 65 - -
Vvi3g0335 269 ProSiteProfiles Bromodomain profile. 190 245 IPR001487 GO:0005515
Vvi3g0335 269 MobiDBLite consensus disorder prediction 1 174 - -
Vvi3g0335 269 Coils Coil 18 45 - -
Vvi3g0335 269 PRINTS Bromodomain signature 207 223 IPR001487 GO:0005515
Vvi3g0335 269 PRINTS Bromodomain signature 193 206 IPR001487 GO:0005515
Vvi3g0335 269 PRINTS Bromodomain signature 223 241 IPR001487 GO:0005515
Vvi3g0335 269 SMART bromo_6 171 266 IPR001487 GO:0005515
Vvi3g0335 269 Gene3D - 177 247 IPR036427 GO:0005515
Vvi3g0335 269 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 239 - -
Vvi3g0335 269 MobiDBLite consensus disorder prediction 1 30 - -
Vvi3g0335 269 SUPERFAMILY Bromodomain 173 246 IPR036427 GO:0005515
Vvi3g0335 269 Pfam Bromodomain 185 244 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0335 Vvi-Chr3 2799982 2801628 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0335 K22184 - vvi:100245230 377.481