Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0334 ATGGAAGATAGAATGATGTGGAAAGTGACTTCGAATGAGAGTTTTTCAGTTAAATCGCTCTATAATGATCTATCTTCAAGAAGAGCTGGTCTTTTCCCTCATGGGTTGATATGGAACCCTAGTGTGCCGTCCAAAGTGAGTTTCTTTGCTTGGGAGGCTGCTTGGGGTAAGGTGCTTACTATGGACCAGCTTAAAAAGAGGGGTTGGGCTGTTGCTAACAGATGTTTTATGTGCTGTGAGGAAGAGGAGTCAATTGATCATATCCTTATTCATTGCTCTAAGGCAAGAGCCTTATGGGATTTATTGTTCGCCCTTTTTGGAGTGTGTTGGGTCCTCCCTTATTCGGCTAGAGAGACCCTTATTGAATGGAGGGGCTTTATGTTGGGCAAGAAGCATAGAAAGGTGTGGAAGGCAGCCCCGTTGTGCCTCTTTTGGGCGGTTTGGATGGAAAGAAACAGGATTGCTTTCGATAATGAGGACTTTTCGGTTCATAGGTTGAAGAATTCTTTTGTTTGTAATCTTTGGGTGTGGACAAAATCAATTGTAAATGTAGATCCTCTCACTTTACCTAGTGTGTGCATTGTAAGATACGAATTGCGATTCTTGTCAATTTTCATAAAAATGTATCGTATCGTGTATCGTAAGTTTTTAACAATTATGAAAGATGTTTTCTTGATCTGTTCAAATGCGATGCAGTACAATGCCCCAGATACCATTTATTTTAAACAGGCACGATCCATACAAGAATTGGCGAAGAAGAATTTTGAGAATTTAAGGCAAGATAGTGATGACAATGAGCCCGAGCCGAAAAGGAGAGGTAGACCACCAACCAAGAATATAAAGAAGCCTCTGGGCAGGCCTTCTTTGGAGCGGCCTGGTTCAGAGTTTTCCTCAGATGCAACTCTTGCTACTGGGGGAGAAAACACCATGTGGTCCAATCATGATCTGAGAAAGGGAGCTCTTATTTCAGACAAATCTGGTCCTGCTGATTCATTCGGCCGGTCTTTGCATGGCACCCGCTACAGTGATGGTAATACTGGTTGGTCTGCTGATCAGAAATTAGAGAGACATGATGAATTTACAGGTTCTATTTTGAAAGGTATTTCCCTGAAGCATGCAAAGAAGCCATTTGTACTTGATGAGAACAGACGCAATACCTACAAACAATCCTCTTCAATAGCTGTTGGGAGAGAGCCATCTGTGTTGACTACCTTTGATGGGGAGAAGAAACAGCTAATGCCTGTGGGGCTTAACGCAGAGTATGGTTATGCAAGGAGCCTGGCTCGATTTGCTTCCAACTTGGGCCCTGTTGCCTGGAAAATTGCTGCAAAGAAGATTGAAAAGTCTTTGCCTCCTGGAGTGAAGTTTGGACCAGGATGGGTAGGAGAGAATGATGTTATACCTCCAAAGCCACTTTTCGTTCCTTCATCAACACCACTCTCATCACTCCCGGGAGATTCTATACCTTGCAGTATGGATTCTCAGGAGGATAAACCATCACAGAAGACTGGAGGAATCGGTTTACCAGAGAGGAATGTGCTTTCAGCTCGTGCAGCCCTGGCTAACCATCCGGGCAAGTCTCTCCTTACATCTGCTGCTGCCTCACCTCTCATCAATACTGCTAACAAAGCTTCGGGACCCAGCAGTGGAAGCACGGAAGCTAGTATTGGATTGAATGCACAATCTGGGTTCAGCATACTAAATAGCAGTGCTGGTGCTGTCAGGCCCAGACCACCCTTCCAAATTCATCAAGGCCCCACTGCCCTCCATCCTGGCATGAACGGCTTCAATGGCGCCTATGGTTTCAACATTCCAACTCAGATGGGAAAACCAATGGGAGCTGCCAGGCCAACTGGGTTCAACCTCCAGGCTCCTCAGATGCTCGATGCCATCTCCCGAACCACCCCCAACTTCGGCCATCCAGGGATGGGAAATAACCTAACCCCCGAGGACCCCAAGTTCTTGGAAAAATCAACTACAACCAACTCGAGCAGCCCATTATTACCTCATCCAGGAGGAGAGGCCGCCGCTGCCCCACGAGTAGGGCCCCATCCACAGCCCTCCTGGCCGGGACTGCCACCCCAACAGCGACAAGATTCAGTACCCCCTGACCTTAACGTCAGATTCCAGTCTCCAGGATCTCCTAGCTCTAGCAAGGTCGACTCCACACAGCCTGATTTAGCTCTGCAGCTCTGA 2196 0.4686 MEDRMMWKVTSNESFSVKSLYNDLSSRRAGLFPHGLIWNPSVPSKVSFFAWEAAWGKVLTMDQLKKRGWAVANRCFMCCEEEESIDHILIHCSKARALWDLLFALFGVCWVLPYSARETLIEWRGFMLGKKHRKVWKAAPLCLFWAVWMERNRIAFDNEDFSVHRLKNSFVCNLWVWTKSIVNVDPLTLPSVCIVRYELRFLSIFIKMYRIVYRKFLTIMKDVFLICSNAMQYNAPDTIYFKQARSIQELAKKNFENLRQDSDDNEPEPKRRGRPPTKNIKKPLGRPSLERPGSEFSSDATLATGGENTMWSNHDLRKGALISDKSGPADSFGRSLHGTRYSDGNTGWSADQKLERHDEFTGSILKGISLKHAKKPFVLDENRRNTYKQSSSIAVGREPSVLTTFDGEKKQLMPVGLNAEYGYARSLARFASNLGPVAWKIAAKKIEKSLPPGVKFGPGWVGENDVIPPKPLFVPSSTPLSSLPGDSIPCSMDSQEDKPSQKTGGIGLPERNVLSARAALANHPGKSLLTSAAASPLINTANKASGPSSGSTEASIGLNAQSGFSILNSSAGAVRPRPPFQIHQGPTALHPGMNGFNGAYGFNIPTQMGKPMGAARPTGFNLQAPQMLDAISRTTPNFGHPGMGNNLTPEDPKFLEKSTTTNSSSPLLPHPGGEAAAAPRVGPHPQPSWPGLPPQQRQDSVPPDLNVRFQSPGSPSSSKVDSTQPDLALQL* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0334 731 MobiDBLite consensus disorder prediction 652 668 - -
Vvi3g0334 731 PANTHER BROMODOMAIN CONTAINING PROTEIN 211 730 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 569 589 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 693 731 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 484 501 - -
Vvi3g0334 731 SUPERFAMILY Bromodomain 203 269 IPR036427 GO:0005515
Vvi3g0334 731 MobiDBLite consensus disorder prediction 294 311 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 484 508 - -
Vvi3g0334 731 CDD Bromodomain 184 253 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 257 274 - -
Vvi3g0334 731 Gene3D - 199 282 IPR036427 GO:0005515
Vvi3g0334 731 MobiDBLite consensus disorder prediction 632 731 - -
Vvi3g0334 731 MobiDBLite consensus disorder prediction 257 311 - -
Vvi3g0334 731 Pfam zinc-binding in reverse transcriptase 15 99 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0334 Vvi-Chr3 2772318 2778369 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0334 K22184 - vvi:100245230 1027.7