Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0325 ATGCGTTTCCCAACCACTCCTTTAGCTCCAAAACTCCCAAACTGGAACTTGGGAATCAAAGATTCAACTAATCGCAAATGGTGGGACTCGTGGGAAGCCTGTTCTCGCTACCACCAAATGAAGAAAGCTGGAGCTCAGCTTACAGACCCTACATTGGTCCACTCCATCCTCAAGGCCTGTTCAAGCCTCCCTGTTCGGCACGGAAAATCCATCCATGCCTCTTTGCTCAAGCAGGGATTTGATTCCCTCACCTCCACTGGAAACTCCGTCCTGGACTTTTACATGAAAACTGGAGCCTTGGATTCTGCATTGTTTGTTTTTGATTCCATGAGGAGCCGTGATTCAGTTTCTTGGAATATAATGATCCATGGACATCTTAGTCGGGGTGCTTCTGATAAAGGCCTGTGGTGGTTTAGGCAAGCAAGAGTTATTGCATTTGAACCCAATGTTTCCACCTTGGTGCTTGCGATTCATGCTTGTCGCAGTCTTGGAGCCATGGAGGAAGGACTTAAAATGCATGGCTACATAATTCGAAGCGGGTTTTTGGATATTCCTTCTGTGCAGAACTCTCTGTTGAGCATGTATGCAGACAATGACATGGAGCGTGCTGAGGAATTGTTTGATGAAATGTGTGAGAGGGATGTTATCTCTTGGAGTGTCATGATTGGGGGTTATGTGCAGACTGGGGAAGCTAAAATGGCTTTGCAGTTGTTCCTGGAGATGACATCTAATGCCAGCATTGAACTGGATGGAATAACAATGGTGAGTGTCCTAAAAGCCTGCGCCAACACAGGTGACATTAGCATGGGAAGGTCGGTCCATGGGGTTGTCATCTGTAGAGGTTTGGATTATGATTTGTTTGTTGGGAATTCCATAATTGATATGTACTCCAAGTGTGATGACCATGAATCAGCATTTAAAGCTTTCAATGAGATGCCCTGCAGGAACACTGTTTCTTGGAATTCGATCATATCTGGACTGGTTCGTACTGAGAAGCATTCAGAAGCTCTGTCACTGTTTTATTCAATGGGGAAGGCAGGGTTCAGGGCAGATGAGGTGACTCTTGTGAATCTTCTTCAATCCTGTAAGTACTTTGTAGATCCATTTCAGTGCAAATTCATCCATTCTATAGTAATCCGGTGGGGCTATGAATTAAACGAGTTTGTGATAAATTCGTTGATTGATGCTTATTCGAAGTGTGATCTCATTGAGCTTGCATGGAAACTGTTTGATCGGTTGAAGACAAAGGACACGGTCTCATGGAGTGCGATGATAGCAGGTTTTAACCACTGTGGCAAGCCTGATGAAGCAATAGCTCTCTTCCAAGAGATGAACCAGGCACAAGAGAAGCCTAATGGGGTTACCATTTTAAGTCTTCTTGAGGCTTTCTCAGTTTCAGCTGATCTAAAAAGGTCAAAATGGGCACATGGGATAGCGATTAGAAGAGGCTTGGCAGCAGAAGTAGCAGTTGGAACTGCAATCCTGGATATGTATGCAAAGTGTGGGGAAATAGGATTGTCAAGGAAGGCATTTGATCAAATACCCGAAAAGAATATTGTGTCATGGGGAGCCATGATAGCAGCTTGTGGCATGAATGGCCTAGCGCGTGATGCCCTAGCTCTGCTGTCTGAAATGAAGCTGCATGGTTTGAAGCCCAATGTAGTGACGACCCTGTCAGTGTTATCTGCATGTAGCCATGGAGGACTGGTTGAAGAGGGGCTCTCCTTTTTTGAAAACATGGTTCAAGACCATGGAGTTGAGCCTGGACTTGAACACTACTCATGCATGGTTGACATGTTGAGCCGTGCAGGAAAGCTCAACTCTGCAATGAATTTGATCGAGAAGATGCCTGAAAGGATGAGAGATGGTGCAGGCCTTTGGGGGGCACTATTGAGCGCTTGCAGAAGCAGTGGAAACAGCAGGCTTGGAGCAGGAGCTGCTTTTCGTGTGCTCGAGCTCGAGCCTCAGAGCTCAGCAGGCTATTTTCTGGCATCAAGCATGTATGCTGCAAGCGGCTTATGGGCAGATGCAGCAAGGATGAGATGGTTGGTGAAGGCGAGAGGGGTCAGGGTTGTGGCTGGTTACAGCTTGGTACATGTTGAAGATAAGGCATGGAGATTTGTTGCTGGAGATGAGTCTCACCCAAGGGCTGGCGAGATATGGGGTGTTGTTGAGCAGTTGCATGACTGCATGAAGATTGCTGAGAGGAATGAGAGTGACTGCAGTTGA 2229 0.4643 MRFPTTPLAPKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVEQLHDCMKIAERNESDCS* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0325 742 Gene3D Tetratricopeptide repeat domain 492 701 IPR011990 GO:0005515
Vvi3g0325 742 Gene3D Tetratricopeptide repeat domain 26 183 IPR011990 GO:0005515
Vvi3g0325 742 FunFam Pentatricopeptide repeat-containing protein At3g13880 372 471 - -
Vvi3g0325 742 FunFam Pentatricopeptide repeat-containing protein At3g13880 274 368 - -
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 244 IPR002885 -
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vvi3g0325 742 FunFam Pentatricopeptide repeat-containing protein At2g17210 492 708 - -
Vvi3g0325 742 Pfam PPR repeat 592 619 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat 88 113 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat 116 140 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat 216 243 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat 197 214 IPR002885 -
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Vvi3g0325 742 Gene3D Tetratricopeptide repeat domain 371 475 IPR011990 GO:0005515
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 416 IPR002885 -
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 588 IPR002885 -
Vvi3g0325 742 Pfam E motif 641 698 IPR046848 -
Vvi3g0325 742 Pfam PPR repeat family 517 565 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat family 315 362 IPR002885 -
Vvi3g0325 742 Pfam PPR repeat family 416 463 IPR002885 -
Vvi3g0325 742 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 199 740 IPR046960 GO:0003723|GO:0009451
Vvi3g0325 742 FunFam Empty pericarp7 182 273 - -
Vvi3g0325 742 NCBIfam pentatricopeptide repeat 318 351 IPR002885 -
Vvi3g0325 742 NCBIfam pentatricopeptide repeat 419 451 IPR002885 -
Vvi3g0325 742 NCBIfam pentatricopeptide repeat 389 416 IPR002885 -
Vvi3g0325 742 NCBIfam pentatricopeptide repeat 520 554 IPR002885 -
Vvi3g0325 742 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Vvi3g0325 742 Gene3D Tetratricopeptide repeat domain 275 367 IPR011990 GO:0005515
Vvi3g0325 742 Gene3D Tetratricopeptide repeat domain 185 274 IPR011990 GO:0005515
Vvi3g0325 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Vvi3g0325 742 FunFam Pentatricopeptide repeat-containing protein At2g17210 26 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0325 Vvi-Chr3 2729683 2731911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0325 33 727 Glycoside Hydrolase AT3G49170 31.683 1.94e-111 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0325 - - vvi:100252032 1498.8