Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0324 ATGATTTTCTCGGCGAGAAACATGGTGTTCTCGTTTCGTCTTCTCGCCGCCCTTTCGCTGTTACAGGTATTAATTTTTGCATCTTTACTCGGAGCAGAGAAGACTGATTCACAGTTCCTTTTGTTTCCCAATGCCACGTCTGGGGAAAGGCATTCCCCAGAATACTGTGCAATGTACGACATCTGTGGGGAGCGCAGTGATGGTAAAGTTTTGAATTGTCCATATGGGACCCCTGCTGTGAAGCCTGATGAGTTTCTTTCTGCAAAAATCCAAAGCTTATGTCCCATGATAAGTGGAAATGTTTGCTGTACGGAGGCTCAGTTTGATACTCTGCGGGCACAAGTTCAACAAGCAATCCCTTTTCTTGTGGGCTGCCCAGCATGCTTGAGGAACTTCTTAAATCTTTTCTGTGAGCTTTCTTGCTCCCCGAATCAAAGTCTGTTCATCAATGTGACTTCCATCGCCAAGGGAAATTGCAGTTCGACTGTGGATGGCATTGATTTTTATGTAAGTGATGCTTTTGGGGAAGGGCTATATAACTCCTGCAAGGATGTAAAGTTTGGGACTATGAATACAAGGGCAATACAATTTATTGGTGCAGGTGCTCGAAATTTTAAAGAATGGTTTGCATTTATTGGCCAGCAAGCTGACCTTGGAATGCCTGGTTCACCTTATGCTATTAATTTTAAGTCAAGACCTGAATCATCTGGAATGGAGCTTATGAATGTGTCTATTTATTCATGTGGTGACACTTCACTAGGATGCTCTTGTGGTGATTGCCCTTCATCTCCAGTGTGTTCTGACTATGAACCTCCTTCTCCACAACAAAAGGATGCCTGCTCGATTAGCCTTGGGTCTGTGAAGGTCAAATGCATTGAATTTTCATTGGCAATCCTATATATTGTGTTGGTTTCTGCATTTTTCGGGTGGGGTTTGTTTCATCGGACAAGAGAAAGGAGGAGGATACCTGCATCAAACATGAAACCGTTGTTGAACTTTGAGGATGAGAAGCTCACTACTCTGAAGGTGCATGAGATGGTTCCTCAAGAGACAAATGTACAACTTTCTGCTGTTCAAGGATACATGTCGAGTTTCTACAGGCAATATGGAACATGGGTTGCCAAAAATCCCAGCCTTGTGCTGTGTATGTCGTTGGCAGTTGTTCTTATACTTTGTTTAGGTCTAATCCGTTTCAAGGTGGAGACACGGCCTGAGAAGCTGTGGGTAGGTCCTGGGAGTCGGGCAGCAGAAGAGAAAAATTTCTTTGACAGCCACCTAGCCCCTTTTTACAGAATTGAACAGCTCATATTGGCCACCATGCCAGATATCAAGAGTGGCAAGTCTTCCAGTATTGTATCAGATGATAATATCCAGTTACTATTTGAAATACAAAAGAAGGTTGATGGACTTCGTGCAAATTATTCTGGCTCAGTGGTGTCTCTAACTGATATTTGTTTGAAGCCTATGGGACAGGATTGTGCTACTCAAAGTGTTCTGCAGTATTTTAAAATGGACCCTGAAAATTATTATGGCTATGGAGGAGTTCAACATGTTGAGTACTGCTTTCAGCATTACACTACTGCAGACACTTGCATGAGTGCTTTTAAGGCTCCACTTGATCCAAGCACTGCCCTGGGGGGATTTTCTGGGAACAATTATACTGAGGCTTCTGCATTTATTGTGACCTACCCAGTAAATAATGCAATTGGTGGAGCAGGCAATGAAAATGGGAAAGCTGTGGCCTGGGAGAAGGCTTTTGTTCAGTTAGTGAAGGATGAGCTGCTGTCAATGGTGCAGTCTAGAAATCTCACTCTTTCATTTTCATCTGAAAGCTCAATTGAGGAAGAATTGAAAAGAGAAAGTACAGCAGATGTTATAACAATATCAATAAGCTATCTTGTAATGTTTGCGTACATATCAATAACCTTGGGAGATGTGTCTCGTTTATCTTCTTTCTATGTTTCATCCAAGGTATTGCTTGGTCTTTCAGGAGTTATTGTTGTCATGCTATCTGTCCTTGGATCTGTAGGATTTTTCAGTGCCATCGGAGTAAAATCTACGTTAATCATAATGGAAGTCATTCCTTTCCTTGTTTTGGCTGTTGGAGTCGATAACATGTGTATACTGGTACATGCTGTGAAGCGACAATCCTTAGATTTGCCTCTAGAAGGACGAATAAGTAATGCACTTGTTGAAGTTGGTCCGTCCATAACACTAGCTAGTTTGTCTGAAGTTTTGGCGTTTGCAGTTGGAAGTTTCATTCCTATGCCGGCATGCCGTGTTTTCTCGATGTTTGCAGCTTTGGCTGTTCTACTGGACTTCCTTCTGCAAGTTACTGCTTTTGTTGCCTTGATAGTGTTTGACTTTATGAGAGCTGAGGATAACAGGATCGACTGCTTCCCATGTATAAAAATTCCATCATCTTCTGTGGAATCTGATGAAGGCATCAATCAGAGAAAGCCAGGAGGATTGCTGGCTTGGTATATGCAGGAAGTTCATGCTCCCATTCTTGGTATTTGGGGAGTTAAAATATTCGTCATTGCTGCTTTTTTTGCTTTCACATTAGCAAGCATTGCATTGTGTACAAGAATTGAACCTGGTTTAGAGCAACAAATTGTCCTTCCTCGGGATTCATATCTTCAGGGATATTTCAATAATGTTTCAGAGTATCTCAGAATTGGACCTCCATTATACTTTGTTGTTAAAGACTATAATTACAGCTCGGATTCCAGACACACAAATCAGTTGTGCTCCATCAACCAGTGTGACTCAAACTCTCTTTTGAACGAGATATCAAGAGCATCTTTGGTGCCAGAATCAAGCTACATCGCTAAGCCAGCTGCCTCCTGGCTTGATGACTTTTTAGTATGGATGTCACCAGAAGCCTTTGGTTGCTGTAGAAAGTTTGTAAATGGTAGTTATTGCCCACCAGATGATCAGCCTCCTTGCTGTTCTCCTGATGAAGGTTATTGTGACCTAGGAGGGGTGTGCAAAGACTGTACAACGTGCTTCCGTCACTCAGATTTGAATAGTGGCCGGCCATCTACAGAACAATTCAGGGAGAAGCTTCCATGGTTCCTTAATGCATTGCCCTCTGCTGATTGTGCAAAGGGTGGCCATGGAGCTTATACTAGCAGTGTTGATCTGAATGGTTATGAAAGCAGTGTTATACAAGCATCAGAGTTCCGTACATATCACACACCACTAAACAAACAGGTTGACTACGTTAATTCAATGAGAGCTGCAAGAGAATTCAGCTCAAGGGTTTCTGATGCCTTGAAGATCCAAATCTTTCCATATTCAGTGTTCTACATGTTCTTTGAGCAATATTTGGATATCTGGAGGACAGCTTTAATCAACATTGCTATAGCACTTGGTGCTGTATTTATTGTTTGTCTAGTTATCACTTCCAGTGTATGGAGTTCAGCAATTATTTTACTTGTTTTGGCAATGATTATTGTGGATCTCATGGGTGTGATGGCATGTCTGGATATCCAACTGAATGCAGTCTCTGTTGTAAACCTTATAATGTCAATTGGGATTGCTGTTGAGTTCTGTGTCCATATTTCACATGCCTTTTCGGTAAGCCAAGGTGATCGGAACCAACGAGCAAAGCTGGCTCTGGGTACCATGGGAGCCTCTGTCTTCAGTGGAATTACGCTTACAAAGTTAGTCGGGGTTATTGTCCTCTGCTTCTCAAAATCAGAAATTTTTGTGGTTTATTACTTCCAAATGTATCTGGCATTGGTTCTTATTGGTTTCTTGCATGGGCTTGTATTTTTACCGGTGATACTAAGCATGATTGGTCCACCATCAATGCATGTACCCATAAAACAGCAAGAAGATGAGCCCTCTTCGTCAGCATTATTGGGCTAA 3876 0.4203 MIFSARNMVFSFRLLAALSLLQVLIFASLLGAEKTDSQFLLFPNATSGERHSPEYCAMYDICGERSDGKVLNCPYGTPAVKPDEFLSAKIQSLCPMISGNVCCTEAQFDTLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSLFINVTSIAKGNCSSTVDGIDFYVSDAFGEGLYNSCKDVKFGTMNTRAIQFIGAGARNFKEWFAFIGQQADLGMPGSPYAINFKSRPESSGMELMNVSIYSCGDTSLGCSCGDCPSSPVCSDYEPPSPQQKDACSISLGSVKVKCIEFSLAILYIVLVSAFFGWGLFHRTRERRRIPASNMKPLLNFEDEKLTTLKVHEMVPQETNVQLSAVQGYMSSFYRQYGTWVAKNPSLVLCMSLAVVLILCLGLIRFKVETRPEKLWVGPGSRAAEEKNFFDSHLAPFYRIEQLILATMPDIKSGKSSSIVSDDNIQLLFEIQKKVDGLRANYSGSVVSLTDICLKPMGQDCATQSVLQYFKMDPENYYGYGGVQHVEYCFQHYTTADTCMSAFKAPLDPSTALGGFSGNNYTEASAFIVTYPVNNAIGGAGNENGKAVAWEKAFVQLVKDELLSMVQSRNLTLSFSSESSIEEELKRESTADVITISISYLVMFAYISITLGDVSRLSSFYVSSKVLLGLSGVIVVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQSLDLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFMRAEDNRIDCFPCIKIPSSSVESDEGINQRKPGGLLAWYMQEVHAPILGIWGVKIFVIAAFFAFTLASIALCTRIEPGLEQQIVLPRDSYLQGYFNNVSEYLRIGPPLYFVVKDYNYSSDSRHTNQLCSINQCDSNSLLNEISRASLVPESSYIAKPAASWLDDFLVWMSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGYCDLGGVCKDCTTCFRHSDLNSGRPSTEQFREKLPWFLNALPSADCAKGGHGAYTSSVDLNGYESSVIQASEFRTYHTPLNKQVDYVNSMRAAREFSSRVSDALKIQIFPYSVFYMFFEQYLDIWRTALINIAIALGAVFIVCLVITSSVWSSAIILLVLAMIIVDLMGVMACLDIQLNAVSVVNLIMSIGIAVEFCVHISHAFSVSQGDRNQRAKLALGTMGASVFSGITLTKLVGVIVLCFSKSEIFVVYYFQMYLALVLIGFLHGLVFLPVILSMIGPPSMHVPIKQQEDEPSSSALLG* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0324 1291 ProSiteProfiles Sterol-sensing domain (SSD) profile. 624 787 IPR000731 -
Vvi3g0324 1291 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 41 1276 - -
Vvi3g0324 1291 Pfam Niemann-Pick C1 N terminus 54 282 IPR032190 -
Vvi3g0324 1291 Pfam Patched family 573 900 IPR003392 GO:0016020
Vvi3g0324 1291 Pfam Patched family 1051 1268 IPR003392 GO:0016020
Vvi3g0324 1291 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1078 1269 - -
Vvi3g0324 1291 FunFam NPC intracellular cholesterol transporter 1 1078 1273 - -
Vvi3g0324 1291 FunFam NPC intracellular cholesterol transporter 1 581 798 - -
Vvi3g0324 1291 NCBIfam Niemann-Pick C type protein family 56 1269 IPR004765 GO:0005319|GO:0016020
Vvi3g0324 1291 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 582 787 - -
Vvi3g0324 1291 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1076 1274 - -
Vvi3g0324 1291 Gene3D Multidrug efflux transporter AcrB transmembrane domain 578 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0324 Vvi-Chr3 2681462 2727968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0324 18 1291 Miscellaneous Gene Families AT4G38350 72.504 0.0 1871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0324 K12385 - vvi:100257163 2518.42