Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0323 ATGGATCAAAGAAACAAACTCACCAAAGCTCTGATCAAGAACACCCACAATCCCACATTGGCATGGCATCTCTTCAAACGCATCCTTTCCATTCCAACCTCTTCGTCTTCCATCTCCTCCCGTTCCATTCTTCGCTCGATTCCCATAATCACCCATATCCTAATTCGCGCCAAAATGATCTCCCAAATCGATCATCTCCAACAACTCCTCCTTCAACAACCCCAAGAAGTTTCCCACGTTTCCCTTATCGCTCTTATTCGCATCTTAGCGAAATCGGGCCTTTCTGATTTGGCATTTTCCCAATTTCAATCCTTTCGGAGCCAGGTTCCTGCAAATCCTCCCCCAGTTTATCTCTATAATATGGTTCTTGAGTCCTCTCTTCGTGAAGATAAGGTGGATTCCTTTTCGTGGTTGTATAAGGACATGGTTGTTGCTGGGGTTTCCCCGGAAACTTATACTTTGAATCTTTTGATTGCTGGGCTCTGTGATTCAGGTCGGTTCGAGGATGCCCGGGAGGTGTTTGATAAAATGGGTGTAAAAGGGTGTAGACCTAATGAGTTCAGTTTTGGGATTTTGGTTCGTGGGTATTGCAGGGCAGGGCTGAGTATGCGAGCTTTGGAGCTTTTAGATGGGATGGGGAGTTTTGGGGTTCAACCTAATAAGGTCATATATAATACTTTGATTTCTAGTTTTTGTAGGGAAGGGAGGAATGAAGAAGCTGAGAGATTGGTGGAGAGGATGAGAGAGGATGGTCTGTTTCCTGATGTTGTTACTTTCAATTCTAGGATTTCTGCTCTTTGCAGTGCTGGAAAGATTCTTGAAGCTTCTAGGATTTTCAGAGACATGCAGATAGATGAGGAGTTGGGGTTGCCTCGGCCAAATATCACAACATTCAATCTAATGCTGGAGGGATTTTGCAAGGAAGGGATGTTGGAGGAAGCGAAGACCCTGGTTGAGTCTATGAAAAGAAATGGCAATCTTATGGAGTTAGAGAGCTATAATATATGGCTGTTGGGTTTGGTAAGGAATGGAAAACTGTTAGAGGCACAATTGGCGCTTAAAGAAATGGTAGATAAGGGCATAGAACCAAACATTTACTCTTTCAACACAGTGATGGATGGACTTTGCAAGAACGGATTGATCTCTGATGCAAGAATGATTATGGGGTTAATGATCAGTAGTGGAATTGGTCCTGATACAGTAACTTATAGTACTTTACTCCATGGATGCTGTAGCACAGGGAAGGTACTCAAAGCCAATAATATTCTGCATGAGATGATGCGGAGGGGCTGTTCTCCAAACACCTATACTTGCAACATCTTGCTGCACAGTCTATGGAAAGAGGGGAGGATATTTGAAGCAGAGAAATTGCTGCAAAAGATGAATGAGAGAAGTTATGATTTGGATAATGTAACCTGCAATATTGTCATTGATGGTCTATGCAAAAGTGGAAAATTGGATGAAGCAGTTGAAATTGTCGAAGGGATGTGGATTCATGGAAGTGCTGCTCTTGGCAACTTAGGAAATTCATTTATTGGTCTAGTGGATAGCAGTAGTAATGGGAAGAAATGCCTGCCCGATTTGATCACGTATTCAATCATAATCAATGGATTATGCAAAGCTGGTAGGCTTGATGAAGCTAGAAAGAAGTTCATTGAGATGGTGGGTAAAAGCCTGCATCCTGATTCGATTATTTATGATACTTTCATTCATAGTTTCTGTAAACATGGAAAAATATCATCAGCATTTCGTGTTCTCAAGGATATGGAGAAAAGAGGTTGCAACAAGAGCTTGCAGACTTATAATTCATTGATCTTGGGCTTAGGAAGTAAGAATCAAATATTTGAAATCTATGGGCTGCTGGATGATATGAAAGAAAAAGGAATCACTCCTAACATTTGCACTTATAATAATATGATTAGCTGTCTCTGTGAAGGAGGGAGAATTAAAGATGCCACTTCTTTGTTAGATGAAATGCTGCAAAAGGGCATTTCCCCTAATATTTCTTCCTTCAGATTATTAATTAAAGCTTTCTGCAAAGCAAGTGATTTTGGCGTGGTAAAAGAAGTGTTTGAAATTGCTTTGAGTATATGCGGCCACAAGGAAGCTCTTTATAGTTTAATGTTCAATGAGTTACTTATTGGAGGAGAAGTCTCAGAAGCTAAGGAACTATTTGATGCTGCTTTAGATAGATGTTTTGATCTAGGAAATTTCCAGTATAATGATCTCATTGAAAAACTTTGTAAGGATGAAATGTTAGAGAATGCAAGTGATATTCTCCATAAGATGATTGATAAGGGGTATAGGTTTGATCCTGCATCTTTTATGCCAGTGATTGATGGTCTGGGTAAAAGGGGAAAAAAACATGATGCTGATGAACTTGCAGAAAGAATGATGGATATGGCTTCAGAGGGTATGGTGGAAAATAAGATTACTAGAAATGAGAGTGCATTCAACCGTCAGAAACGAAACAAATTCAGTGGAAGTGATTGGCAAACAATAATACACAGAGATGATGGCAGTGGACTAGCATTGAAAGCACTTAAGCGAGTACAGAAAGGCTGGGGTCAAGGAAGTATCTCAAGTCTGCAACCTCAGAAAAATGACTTTCTTGATTACTGGGAGGGAACTAATTAA 2637 0.4031 MDQRNKLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKMISQIDHLQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDMASEGMVENKITRNESAFNRQKRNKFSGSDWQTIIHRDDGSGLALKALKRVQKGWGQGSISSLQPQKNDFLDYWEGTN* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 287 380 IPR011990 GO:0005515
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 201 286 IPR011990 GO:0005515
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 592 689 IPR011990 GO:0005515
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 46 200 IPR011990 GO:0005515
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 690 825 IPR011990 GO:0005515
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 381 506 IPR011990 GO:0005515
Vvi3g0323 878 Pfam PPR repeat family 149 198 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat family 219 268 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat family 398 445 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat family 332 377 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat family 631 680 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat family 561 608 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vvi3g0323 878 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 292 595 - -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Vvi3g0323 878 Gene3D Tetratricopeptide repeat domain 507 591 IPR011990 GO:0005515
Vvi3g0323 878 Pfam PPR repeat 740 767 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 285 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 257 283 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 222 256 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 366 400 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 436 466 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 600 633 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 529 562 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 152 186 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 188 220 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 565 594 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 401 435 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 471 497 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 297 325 IPR002885 -
Vvi3g0323 878 NCBIfam pentatricopeptide repeat 634 668 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat 293 322 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat 523 555 IPR002885 -
Vvi3g0323 878 Pfam PPR repeat 467 496 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 433 IPR002885 -
Vvi3g0323 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0323 358 799 Glycosyltransferase AT1G05670 26.966 5.58e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0323 - - vvi:100262264 1712.2