Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0316 ATGAGTAGAAGCTTGGGAATTCCGGTGAAGCTGCTTCATGAAGCTGCAGGGCATGTGGTTACGGTGGAGCTCAAGAGTGGAGAACTCTACAGAGGAAGCATGATCGAATGCGAAGACAACTGGAATTGCCAACTCGAAAATATCACCTTCACTGCTAAGGATGGAAAAGTTTCTCAACTTGAGCATGTCTTTATCCGTGGTAGCAAAGTCAGGTTCATGGTCATTCCAGATATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAGTTAAGGGCAAGGGCTCAGCTCTTGGAGTTGGCCGTGGTCGTGCTGTTGCGATGCGAGCAAGAGCTCAGGCTGCTGGCCGTGGTGCACCACCTGGTAGGGGAGTTGCACCTCCTGGGCGGAGGTAA 399 0.5088 MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGAPPGRGVAPPGRR* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0316 132 Gene3D - 3 86 - -
Vvi3g0316 132 ProSiteProfiles Sm domain profile. 7 79 IPR047575 GO:0003723
Vvi3g0316 132 SMART Sm3 10 75 IPR001163 -
Vvi3g0316 132 FunFam Small nuclear ribonucleoprotein Sm D3 2 86 - -
Vvi3g0316 132 SUPERFAMILY Sm-like ribonucleoproteins 8 127 IPR010920 -
Vvi3g0316 132 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 5 120 IPR027141 GO:0006396
Vvi3g0316 132 Pfam LSM domain 11 74 IPR001163 -
Vvi3g0316 132 CDD Sm_D3 8 77 IPR034099 GO:0000387|GO:0005681
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0316 Vvi-Chr3 2618017 2619617 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0316 K11088 - vvi:100250427 200.675