Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0313 ATGGGGAGTGTTTCATCGGAGGAGGGAGTGGATGATCAGAGCGATCGGTGCGGGAGCTACAGTCTGAGTGCGGATGTTAGCGAGTCGGAGAGTTGTAGTAGTTTCTCGTGTCGGCGGTACGATGGTGAGGGTGCTTCGAGCTCCATGACGTCTTCGCCGCTGGCTTGCCGGCCGGTGGTAGGGAATTCAAGTTTTCCTGTGGGGCCGCCGCTGATGCTGCCGGTGATTGGGGGGAGAGATGTGGTGGTTTGGGGGGAGAAGCCGGAGAAGCGTGAGACGGATTTGTCAGAAGCTGAGATGATGAAGGAGAGATTTGCTAAGCTTCTACTTGGGGAAGATATGTCTGGAGGAGGGAAAGGGGTTTGTACTGCCCTTGCCATCTCAAACGCCATCACAAATCTCTCTGCTACCGTGTTTGGAGAACTATGGAGGTTGGAGCCATTGGCACCACAGAAGAAGGCAATGTGGTGCAGGGAGATGGAATGGCTGTTATGTGTGAGTGATTCAATAGTTGAGCTTGTACCTTCTATACAACAATTCCCAGGTGGGGGGACATATGAAGTCATGGCTACACGGCCTCGATCGGATTTATACATGAATCTTCCTGCCCTTAAGAAGCTTGATGCCATGTTGCTTAGCATGCTTGATGGGTTTTGTGAAACGGAGTTCTGGTATGTTGATCGGGGAATAATTGTGGCTGAGGCTGACAATCATGACGCATACCCATTGTCTGCTTCTAGCGGGAGACCCTCAATTAGGCAGGAAGAGAAATGGTGGCTACCCTGCCCAAAAGTTCCCCCAAATGGGTTGTCTGAGGATGCAAGGAAGAGGCTGCAGCAATGCAGGGACTGTACGAACCAGATACTGAAGGCAGCCATGGCGATTAATAGCAGTGTGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAGAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAACAGTTCTCCCCAGAATGTCTCCTTGATTGCCTGGACCTATCATCAGAACATCATACTTTGGAAATAGCCAACAGGATTGAGGCGGCAGTGCATGTTTGGAAACAGAAAGACTGGAAAAAACAACCAAAACACTTGAAAGCTAAGCGTTCAACATGGGGAGGCAAGGTCAAGGGCCTTGTTGCTGACACAGAAAAGAATCAATTTCTGGCCATACGAGCTGAGACCCTTCTACACAGTCTGAGGCTTCGTTTCCCTGGCCTTCCCCAGACTGCTTTAGACATGAACAAGATTCAGTACAATAAGGATGTAGGGCAGTCAATTCTAGAAAGTTATTCAAGGGTAATGGAGAGCTTAGCTTTCAACATAATGGCAAGGATAGATGATGTTCTTTATGTAGATGATGCAGTAAAGCGATGTGCAGCAGCAGAATCAATGGCCCTTTTCGGCAGGGGAGGTTTGGGTGGTCTTCCTATCCAGAAACGGATGTCCCCTAGCCCTTTCTCAATCCAACATTCCCCTTTTGCCTCTCCATTTGCTACTCCAACCTTCTGCTCTTCCACACCTCTGACTGGAAGCCCAGGCAGGACACCCCCCTCAAGAAATAAGATGAGCTCCAAGGGGGCACCAGAGCTGAAGCTGGAAAAACCAATCCCAGCACCAGAGATGAAGCTGGAAAAACCAATCCCAGCTGATTTCGAGAAGATGTGGTCATATACTGGGAACCTTAGTGCCAGAAAAGTTTCTGGAGACGCTCCAGAACGTGATTGA 1764 0.4949 MGSVSSEEGVDDQSDRCGSYSLSADVSESESCSSFSCRRYDGEGASSSMTSSPLACRPVVGNSSFPVGPPLMLPVIGGRDVVVWGEKPEKRETDLSEAEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLLSMLDGFCETEFWYVDRGIIVAEADNHDAYPLSASSGRPSIRQEEKWWLPCPKVPPNGLSEDARKRLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKNGKACLGDIIYRYITAEQFSPECLLDCLDLSSEHHTLEIANRIEAAVHVWKQKDWKKQPKHLKAKRSTWGGKVKGLVADTEKNQFLAIRAETLLHSLRLRFPGLPQTALDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDAVKRCAAAESMALFGRGGLGGLPIQKRMSPSPFSIQHSPFASPFATPTFCSSTPLTGSPGRTPPSRNKMSSKGAPELKLEKPIPAPEMKLEKPIPADFEKMWSYTGNLSARKVSGDAPERD* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0313 587 MobiDBLite consensus disorder prediction 1 31 - -
Vvi3g0313 587 MobiDBLite consensus disorder prediction 517 535 - -
Vvi3g0313 587 MobiDBLite consensus disorder prediction 517 557 - -
Vvi3g0313 587 ProSiteProfiles PRONE domain profile. 88 475 IPR005512 GO:0005085
Vvi3g0313 587 FunFam Rop guanine nucleotide exchange factor 1 89 335 - -
Vvi3g0313 587 Gene3D PRONE domain, subdomain 1 88 333 - -
Vvi3g0313 587 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 469 IPR005512 GO:0005085
Vvi3g0313 587 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 33 482 IPR038937 GO:0005085
Vvi3g0313 587 FunFam Rop guanine nucleotide exchange factor 14 336 474 - -
Vvi3g0313 587 Gene3D PRONE domain, subdomain 1 337 475 - -
Vvi3g0313 587 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0313 Vvi-Chr3 2604678 2608928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0313 - - vvi:100260682 1169.84