Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0310 ATGCAGTGCAAGATATATAGACAAAGAATTCAAGGAAAGAAGCAGCTTCTTAATTTACTCTTAATGGCAGAAAGATGGGTTCCTTCATTAAGCTTTTTCCTAGTTATGGTTGTCCTTCACTCAGCAGATGCTTCAATTCCAGCTATGTTCATACTAGGGGACTCAACAGCTGATGTTGGAACCAACAGTTTATTGCCTTTTAGTTTTATAAGAGCTGATTTTCCTTTCAATGGCATTGACTTTCCCTCCTCACAACCAACTGGGAGGTTCAGCAATGGCTTCAACACTGTAGATTTTCTCGCCAATCTAACAGGTTTCCAAATAAGTCCACCACCCTTTCTTTCTCTAGTTGACAGTCAGTCTTCTATGAACAAGCAGTTTCTTAAAGGTGTAAGCTTTGCATCAGGAGGATCTGGACTTCTTGATACAACAGGACAATCTCTGGGAGTCATCCCCTTGGGAAAGCAAATTCAGCAGTTTGCCACAGTCCAGAGCAATCTTACTGCAGCAATAGGTTCAGATGAAACAGAGAAGCTGCTCTCCAAATCTTTGTTTCTCATCAGCACTGGAGGCAATGATATTCTTGGCCATTTCCCCTTAAATGGTGGTTTAACCAAGGAAGAGTTCATAAAAAACCTTAGTGATGCATATGATAACCACTTAAAGAATTTATTCGAGCTTGGGGCAAGGAAGTTTGCCATTGTAGGCGTTCCACCAATTGGGTGTTGTCCGTTGTCAAGACTTGCAGATATCAACGATCATTGTCATAAAGAAATGAATGAGTATGCCAGAGATTTCCAGACAATACTCAGTGCCCTCTTGCAAAAGCTCAGCTCAGAATATGGAGGCATGAAGTACTCACTTGGAAATGCATATGAAATGACAATGAATGTTATAGACGATCCTCCTGCATTCAATTTAAAGGATGTCAAAAGCGCATGTTGTGGAGGTGGGAGGTTAAATGCATTGCTTCCTTGCTTAAAGCCTCTGGCTACTGTCTGCTCAAACCGGGATGACTACTTATTCTGGGATTTGGTCCACCCAACACAGCATGTTTCTAAGCTAGCAGCTCAGACCCTCTACAGTGGTCCACCAAGACTTGTATCTCCAATCAACTTCTCTCAGTTGGTTGAGGATAATTAG 1143 0.4182 MQCKIYRQRIQGKKQLLNLLLMAERWVPSLSFFLVMVVLHSADASIPAMFILGDSTADVGTNSLLPFSFIRADFPFNGIDFPSSQPTGRFSNGFNTVDFLANLTGFQISPPPFLSLVDSQSSMNKQFLKGVSFASGGSGLLDTTGQSLGVIPLGKQIQQFATVQSNLTAAIGSDETEKLLSKSLFLISTGGNDILGHFPLNGGLTKEEFIKNLSDAYDNHLKNLFELGARKFAIVGVPPIGCCPLSRLADINDHCHKEMNEYARDFQTILSALLQKLSSEYGGMKYSLGNAYEMTMNVIDDPPAFNLKDVKSACCGGGRLNALLPCLKPLATVCSNRDDYLFWDLVHPTQHVSKLAAQTLYSGPPRLVSPINFSQLVEDN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0310 380 Gene3D SGNH hydrolase 37 364 IPR036514 -
Vvi3g0310 380 SUPERFAMILY SGNH hydrolase 180 361 - -
Vvi3g0310 380 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 47 376 - -
Vvi3g0310 380 CDD SGNH_plant_lipase_like 47 364 IPR035669 -
Vvi3g0310 380 Pfam GDSL-like Lipase/Acylhydrolase 50 358 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0310 Vvi-Chr3 2588819 2591048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0310 46 363 Acyl Lipid Metabolism Gene Families AT4G10950 31.288 4.15e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0310 - - vvi:100248752 568.926