Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0309 ATGGTTGTCTCTCACTCAGCAGATGGACCGCTTCCTGCTCTTTTCATACTAGGGGACTCAACAGCTGATGTTGGAACCAACACTCTCTTGCCTCAGAGCGTAGTGAGGGCTGACTTACCTTTCAATGGCATTGATTTTCCACACTCAAGACCAACTGGGAGGTTCAGCAATGGCTTCAATACTGCTGATTTTCTTGCCAAGCATATAGGTTACCGAAGAAGTCCACCACCCTTTCTTTCTATTCTAAGCCACTCATCTTCTCTCAGTAAGAAGTTCCTCAGAGGGGTAAACTTTGCATCAGGAGGATCAGGAATCCTCGACACAACAGGACAAACACTGGGAATCATCACTTTGGGAGCGCAAATCCAGCAGTTTGCCACAGTCCACAGTAATCTTACAGCTGCAATAGGTCCAGAAGAAACAGAGAAGTTTCTCTCCAAATCTTTGTTTGTCATCAGCACTGGAAGCAATGATATTATTAACTATTTCCAATCTAATAATCGTACTTTACCCAAGGAAGAGTTCATACAAAATCTAGGATATGCGTATGAGAACCACTTAAGGACTTTGTTCGATCTTGGGGCAAGGAAGTTTGGAATTTTAAGTGTCCCACCAATTGGGTGCTGTCCATCTCTAAGAACTTTGGATCCCTCTTATGGTTGTCTGGAAGAAATGAATGAATATGCTACATTTTTCTATACAACGATCCAAGCCCTAATGCAAAGGCTCAGCTCAGAATATCAAGGAATGAAGTACTCGCTTGGAAATGCATATGACATGGCAATGTATGTTGTCAACAACCCCGTTGCATTCAATTTTACAGATGTGAAAAGCGCTTGTTGTGGAGGTGGGAAGTTAAATGCACAGTCTCCTTGTGTACCAACAGCTGCTCTTTGCTCAGACCGCGATAAGTACCTATTCTGGGATCTGTTCCACCCTACGAAGCATGCTTGTAAGCTGGCAGCTTTTACCCTCTACACTGGGGAGCCAGTATTTGTGTCGCCAATCAACTTCTCTCAGTTGGCCATGGATAATTAG 1038 0.4374 MVVSHSADGPLPALFILGDSTADVGTNTLLPQSVVRADLPFNGIDFPHSRPTGRFSNGFNTADFLAKHIGYRRSPPPFLSILSHSSSLSKKFLRGVNFASGGSGILDTTGQTLGIITLGAQIQQFATVHSNLTAAIGPEETEKFLSKSLFVISTGSNDIINYFQSNNRTLPKEEFIQNLGYAYENHLRTLFDLGARKFGILSVPPIGCCPSLRTLDPSYGCLEEMNEYATFFYTTIQALMQRLSSEYQGMKYSLGNAYDMAMYVVNNPVAFNFTDVKSACCGGGKLNAQSPCVPTAALCSDRDKYLFWDLFHPTKHACKLAAFTLYTGEPVFVSPINFSQLAMDN* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0309 345 Pfam GDSL-like Lipase/Acylhydrolase 14 321 IPR001087 GO:0016788
Vvi3g0309 345 CDD SGNH_plant_lipase_like 12 328 IPR035669 -
Vvi3g0309 345 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 12 341 - -
Vvi3g0309 345 SUPERFAMILY SGNH hydrolase 13 320 - -
Vvi3g0309 345 Gene3D SGNH hydrolase 3 328 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0309 Vvi-Chr3 2585954 2587664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0309 11 331 Acyl Lipid Metabolism Gene Families AT4G10950 32.424 9.88e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0309 - - vvi:100253848 676.781