Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0308 ATGGCTCAGAATGGTGGCATCATATTGCTTCTCTGTGCCACCTTCTCAGTTTTGGCCATGGTTGGTGCTGAAGACCCTTACAGGTTTTTCGAGTGGAATGTCACGTATGGGGACATTTACCCACTTGGGGTTCGCCAACAGGGAATTCTTATCAATGGACAGTTTCCAGGGCCTGACATCTACTCTGTTACAAATGACAACCTCATTATCAATGTCCATAACAGCTTGCCAGAACCTTTCCTCATCTCCTGGAATGGGGTTCAGCAGAGGCGAAATTCGTTTGAAGATGGGGTGTATGGGACTACATGTCCTATCCCACCTGGGAAGAACTTCACTTACATCCTACAAGTAAAAGATCAGATTGGGAGCTTCTTCTACTTCCCATCTCTAGCCTTCCACAAGGCAGCTGGAGGCTTTGGAGGGATCAGGATTCTCAGCAGACCAAGAATCCCAGTTCCATTCCCTGACCCTGCTGGGGACTATACCATTCTCATTGGAGATTGGTACACGCACAATCATAATACCTTGAAGGCCATTCTGGACCGTGGGAGGAGGCTGCCTTTCCCTGATGGCATTCTGATCAATGGTCGCGGAGCCAATGCTGCAAGTTTTACTGTCGAACGAGGCAAAACTTACAGGCTTAGGATATCAAATGTAGGACTCCAGAATTCACTCAATTTTCGGATTCAGGGACACAAGATGACACTGGTTGAAGTTGAGGGAACCCACACTCTCCAGACCTCCTACTCGTCGCTGGACGTTCATGTTGGCCAGTCCTACTCTGTACTGGTTACTGCAGACCAGGCTGCTAAGGACTACTACATTGCAGTTTCCTCCCGGTTCACTGAAAAGGTCCTGACCAGCAGTGCCGTCCTTCACTACAGCAACTCTGTCTCTCCAGTGAGCGGTCCACTCCCTGGTGGACCTACCACCCAGATTGATTATTCTCTTAACCAGGCTCGGTCCATCAGGACTAATCTCACAGCAAGTGGACCGAGACCAAACCCTCAAGGATCTTACCACTATGGTCTCATCAACATCACAAGAACTATCAAGCTAGGGAACACAGCAGGACAAGTTAATGGCAAGCAGCGATATGCAGTTAACAGTGTGTCATTTATCCCTGCTGACACCCCCCTTAAGCTTGCGGACTACTTCAAGATTGGAGGTGTTTTTCGTATAGGAAGCATCCCAGATCAACCAAGTGGCAAGAAAATGTACCTTGACACGTCAGTCATGGGAGCTGACTTCAGAGCATTTGTGGAGATAGTGTTTGAGAACCGCGAGAGTATCATCCAGAGCTGGCATCTTGATGGATACTCCTTCTGGGTAGTTGGAATGAATGGAGGAGTGTGGACACCTGCAAGCAGGAACCAGTACAATCTTAGAGATGCAGTATCGCGTTGCACCACTCAGGTATATCCCAAGTCATGGACTGCTGTGTACATAGCACTAGACAATGTGGGAATGTGGAATCTGAGAACAGAGTTCTGGGCAAGGCAATACCTTGGACAACAATTCTATCTTAGAGTTTACTCCCCAGTGGGGTCGATCAGGGACGAATACCCGATTCCAAAGAATGCACTTCTCTGTGGTAGAGCTGCAGGAAGAAAAACAAGATCCCTCTAA 1629 0.4819 MAQNGGIILLLCATFSVLAMVGAEDPYRFFEWNVTYGDIYPLGVRQQGILINGQFPGPDIYSVTNDNLIINVHNSLPEPFLISWNGVQQRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFFYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTILIGDWYTHNHNTLKAILDRGRRLPFPDGILINGRGANAASFTVERGKTYRLRISNVGLQNSLNFRIQGHKMTLVEVEGTHTLQTSYSSLDVHVGQSYSVLVTADQAAKDYYIAVSSRFTEKVLTSSAVLHYSNSVSPVSGPLPGGPTTQIDYSLNQARSIRTNLTASGPRPNPQGSYHYGLINITRTIKLGNTAGQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFRIGSIPDQPSGKKMYLDTSVMGADFRAFVEIVFENRESIIQSWHLDGYSFWVVGMNGGVWTPASRNQYNLRDAVSRCTTQVYPKSWTAVYIALDNVGMWNLRTEFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCGRAAGRKTRSL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0308 542 CDD CuRO_1_AAO_like_1 29 144 IPR034273 GO:0005507
Vvi3g0308 542 FunFam Monocopper oxidase-like protein 158 332 - -
Vvi3g0308 542 FunFam Monocopper oxidase-like protein 344 541 - -
Vvi3g0308 542 PANTHER MULTI-COPPER OXIDASE 46 507 IPR045087 -
Vvi3g0308 542 FunFam L-ascorbate oxidase homolog 27 148 - -
Vvi3g0308 542 Gene3D - 27 148 IPR008972 -
Vvi3g0308 542 Pfam Multicopper oxidase 160 296 IPR001117 -
Vvi3g0308 542 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Vvi3g0308 542 Gene3D - 343 539 IPR008972 -
Vvi3g0308 542 SUPERFAMILY Cupredoxins 344 533 IPR008972 -
Vvi3g0308 542 Gene3D - 158 332 IPR008972 -
Vvi3g0308 542 SUPERFAMILY Cupredoxins 23 174 IPR008972 -
Vvi3g0308 542 Pfam Multicopper oxidase 379 513 IPR011706 GO:0005507|GO:0016491
Vvi3g0308 542 CDD CuRO_3_AAO_like_1 375 496 IPR034275 GO:0005507
Vvi3g0308 542 SUPERFAMILY Cupredoxins 154 334 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0308 Vvi-Chr3 2582160 2584929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0308 - - vvi:100265895 1101.66