Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0307 ATGGATGCTCTCTTCGTGAATACTTCTCTCTCTCGCCTCAAACTCTCCCCCAAACCCACTTCTCTCTCCCCTCTCCCCTCCCTCCCTCTCCACTCTCTCCACCTCCGACCCGCCCGTCGATTCAACCTCACAGTCTCTCAGAAGCAGTTTGAGGAAACAGAGGAGGTGTTGAAAGATGAAGTGTTCGACAGCTACAATGAGGATGAGTCGTACGGGGAGGTCAACAAGATCATCGGCAGCAGAGCGGCGGAGGGCGGGAAAGGGATGGAGTATTTGATCGAGTGGAAGGACGGCCACGTCCCGACGTGGGTCCCCGCACGTTACGTCGCCGGGGACGTGGTGGCGGAGTACGAAAGCCCCTGGTGGACCGCGGCGAAGAAGGCCGACGACGCCGCGCTGAAGGCCCTGTTGGAATCCGGCGACGGCCGCGACGTCGACGCCGTCGACGAGAATGGCCGGACCGCGCTCCTCTTCGCTGCGGGCCTGGGGTCGGAGGCGTGTGTCCAAATCCTCGCCGACGCCGGCGCGGACTTGAACCACCGCGACAACGGCGGCGGCGGCTTGACGGCCCTCCACATGGCTGCTGGGTACGTGAAGCCCGGCGTGGCTCGGCTCCTCATCCAGCTGGGCGCGGATCCAGAGGCGGAAGACGACAGGGGACGTACGCCGTTGGATCTTGCAAGAGAGATGCTGAGAGCAACACCCAAGGGAAACCCGATGCAGTTTGCGAGAAGGCTTGGGCTCGAGAATGTGGTGAGAGTTCTGGAAGAGGCAATATTCGAGTACGCGGAGGTGCAGGAGATTATGGAGAGGAGAGGGAAGGGTCAAAATCTGGAGTACTTAGTCAAATGGAAGGACGGTAGTGATAACGAGTGGGTCAAAGCTGGGTTGATTGCAGAGGAACTGGTGAGGGACTTCGAGGCCGGGCTAGAATACGCTGTGGCGCAGGGAGTAATGGGGAAAAGGACTGGAGATGATGGGAATATGGAGTACTTAGTGAAATGGACGGATATAGATGAGGCCACGTGGGAGCCTGAGGAGAACGTTGACCCTGATTTGATCAAGGCGTTTGAGGAAAATGGGGCCGCTGATCTAGGGGCCCATGTTGAAGGTGGGTCATGA 1122 0.5909 MDALFVNTSLSRLKLSPKPTSLSPLPSLPLHSLHLRPARRFNLTVSQKQFEETEEVLKDEVFDSYNEDESYGEVNKIIGSRAAEGGKGMEYLIEWKDGHVPTWVPARYVAGDVVAEYESPWWTAAKKADDAALKALLESGDGRDVDAVDENGRTALLFAAGLGSEACVQILADAGADLNHRDNGGGGLTALHMAAGYVKPGVARLLIQLGADPEAEDDRGRTPLDLAREMLRATPKGNPMQFARRLGLENVVRVLEEAIFEYAEVQEIMERRGKGQNLEYLVKWKDGSDNEWVKAGLIAEELVRDFEAGLEYAVAQGVMGKRTGDDGNMEYLVKWTDIDEATWEPEENVDPDLIKAFEENGAADLGAHVEGGS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0307 373 PANTHER MYOTROPHIN 118 286 - -
Vvi3g0307 373 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Vvi3g0307 373 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Vvi3g0307 373 SMART chromo_7 312 362 IPR000953 -
Vvi3g0307 373 SMART chromo_7 261 311 IPR000953 -
Vvi3g0307 373 SMART chromo_7 70 122 IPR000953 -
Vvi3g0307 373 SUPERFAMILY Ankyrin repeat 118 229 IPR036770 -
Vvi3g0307 373 ProSiteProfiles Chromo and chromo shadow domain profile. 263 292 IPR000953 -
Vvi3g0307 373 ProSiteProfiles Ankyrin repeat region circular profile. 186 218 - -
Vvi3g0307 373 Gene3D - 259 308 - -
Vvi3g0307 373 SMART ANK_2a 186 215 IPR002110 GO:0005515
Vvi3g0307 373 SMART ANK_2a 151 180 IPR002110 GO:0005515
Vvi3g0307 373 SMART ANK_2a 116 147 IPR002110 GO:0005515
Vvi3g0307 373 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Vvi3g0307 373 ProSiteProfiles Chromo and chromo shadow domain profile. 313 359 IPR000953 -
Vvi3g0307 373 Pfam Ankyrin repeats (many copies) 171 227 IPR002110 GO:0005515
Vvi3g0307 373 Pfam Chromo (CHRromatin Organisation MOdifier) domain 318 359 IPR023780 -
Vvi3g0307 373 SUPERFAMILY Chromo domain-like 261 309 IPR016197 -
Vvi3g0307 373 Gene3D - 64 115 - -
Vvi3g0307 373 Gene3D - 309 360 - -
Vvi3g0307 373 SUPERFAMILY Chromo domain-like 67 121 IPR016197 -
Vvi3g0307 373 SUPERFAMILY Chromo domain-like 311 360 IPR016197 -
Vvi3g0307 373 Gene3D - 116 258 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0307 141 227 Acyl Lipid Metabolism Gene Families AT5G53470 36.782 2.33e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0307 K12271 - vvi:100243569 693.73