Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0292 ATGGAAGGCTTGAAGCTCGGACACACTCTGCAGAATAGCCATGGCTTGAACCTTCTTGTCCAAATTCCAAATTCAAGCTTAGTTTCCAGACCATCTTTCCCAATTCAACCCAAATGCAACCTGGCTCTTTCCACAGGTTGCCGGGTTTATGCTGGCTCTATAATCAGAAAACTAGCCCTCATTTCTCCCAGTGGTTTGCCCTGTGGACATTCCAATCTGAAGCAAACAAGGGAAGTACGATTTACCACAAGAAGCACATCAGCATCAATACAGCCTATGACTGAGGAACTGGTAGAGGACAAGTCCAAGGATCTCCCAACAAGTGGTGATTCTATACGGCACCGATTTCTCGATTTCTATGCTTCTCGTGGGCACAAGGTTCTTCCAAGTTCTTCTCTTGTGCCAGATGATCCCACAGTTCTACTGACAATTGCAGGAATGCTTCAATTCAAGCCTATATTCCTTGGAAAGGTTCCCAGACAAGTACCTCGTGCTACAACTGCTCAAAGGTGCATACGTACCAATGATGTGGAGAACGTAGGTAAAACATCTCGACACCATACTTTCTTTGAGATGCTTGGGAACTTCAGCTTTGGAGATTACTTCAAGAAGGAAGCAATTAAATGGGCATGGGAGCTTTCAACAATAGAGTATGGATTGCCAGCTGACAGATTATGGATTAGTGTTTATGAAGATGATGATGAAGCTTTAGCAATATGGACCAAAGAGGTGGGTGTTCCTGTGGAGCGCATAAAGAGGATGGGTGCTGAGGACAACTTCTGGACCAGTGGAGTGACTGGTCCCTGTGGTCCATGCTCTGAGATTTATTACGATTTCCATCCTGAGCGGGGATATTCGGATGTTGATCTAGGTGATGACACTAGGTTTATAGAGTTTTACAACCTGGTTTTCATGCAATACAACAAAAAAGATGATGGATCACTGGAACCCCTCAAACAGATGAATATAGATACTGGGCTTGGCCTAGAGCGTATGGCTCGCATCCTTCAGAAGGTTCCAAACAATTACGAGACTGACTTAATTTATCCTATCATAGAGAAAGCCTCAGAATTGGCAAATGTCTCGTATGCTCTTGCTGATGATCATGCAAAAATGAACCTTAAGGTTATTGGAGATCATTTGCGTGCAATTGTTTATCTCATATCAGATGGTGTTGTTCCATCAAATATTGGAAGAGGTTATGTGGCTCGGCGGCTTATCAGAAGAGCTGTTCGAACTGGAAGGTTACTTGGTATAAAGGGAGATGGTAGGGGGAACCCTGAAGGGGCATTTTTACCAACCATTGCAGAAAAAGTAATAGAGTTAAGTAGCCAAATAGATCCCGATGTAAAGAGTAGAGCACCTCGCATTCTTGAGGAGTTGAAAAGGGAGGAGTTGCGTTTTGTACAGACACTAGAGAGAGGAGAAAAGTTGCTTGATGAAATGCTGGCTAATGCATTATTAAATTCTAATGAAAATGGAAACGGGCCTATTTTGTCAGGAAAAGATGTATTTCTTTTGTATGACACTTATGGGTTTCCAGTGGAGATAACAACAGAAGCTGCTGAAGAACGTGGGGTTGGTATAGATATGAATGGTTTTGAAATTGAAATGGAGAACCAAAGGCGGCAATCTCAGGCTGCGCATAATGCTGTTAAACTGGCAGTTGGAAATAGTGCAGATCTTACTGAAAATATTTCTGACACTGAATTTCTAGGATATGAAACCCTCTCTACCAAAGCAGTAATTGAAGGCCTCTTGGTGAATGGGAACCCAGTGATCCAAGTTTCCGAAGGAAGTGATGTAGAAATTTTTCTGAATAGGACACCATTTTATGCTGAATCAGGTGGTCAAATTGGAGATCACGGTTTCTTATATGTAAATGAAGATAGAAACCAAAAAAATGCTGTTGTTGAGATAAAAGATGTCCAGAAATCTCTGGGTAACATATTTGTTCATAAGGGCACTATCAAGGAAGGAGTTGTAGAGGTTGGCAAAGAAGTAGAAGCTGCAGTAGATGCAAACCTGAGGCAACGGGCTAAGATTCATCATACAGCTACTCATTTGCTACAAGCTGCACTTAAAAAAGTTATAGGTGATGAAACATCACAAGCTGGTTCACTGGTGGCTTTCGATCGTCTCAGGTTTGACTTTAACTTCCACCGACCACTTCAGGAGAAGGAGCTTGTGGAAATTGAAGAATTGATCAATGGATGGATTGGGGATGCAACACTGCTCCAGACTAAAGTGATGCCTCTAGCTGATGCAAAAAGAGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGTGAACAGGTACGTGTTGTAGAGGTTCCAGGTGTATCCATGGAGCTATGTGGTGGGACCCATGTCAGCAATACTTGTGAAATACGTGGCTTCAAAATAATCTCAGAACAGGGTATTGCATCTGGGATCAGGCGTATTGAAGCTGTTGCTGGGGATGCTTTCATCGAATATGTCAATGCTAGAGATAATCACATGAGACAACTATGCTCCACTCTGAAAGTGAAAGCTGAAGAAGTGACTACTAGGGTAGAAGCTCTCTTGGAGGAGTTACGGATGACAAGAAATGAAGTTTCTGCTGTTCGTGCAAAAGCAGCAGTATACAAAGCATCAGTTATGGCAGGCAATGCATTCCCAGTGGGGACTTCAAAAAAAATCAGGGTACTAGTTGAGAGTATGGATGATATTGATGCGGATTCACTAAAGAGTGCAGCTGAATACCTCATTGATACGCTACAAGATCCTGCAGCTGTCATTTTGGGCTCATGTCCTAGTGAAGAGAAGGTAAGTTTGGTTGCAGCATTCACCCCAGGGGTTGTTGATCTAGGAATTCAAGCAGGGAAGTTTATAGGGCCCATAGCTAAGTTGTGTGGTGGAGGAGGAGGTGGCAGACCTAATTTTGCTCAGGCAGGTGGAAGGAAGCCTGAGAATTTGTCAGGTGCTCTAGAAAAAGCTCGAGAAGAGCTTGTTGCCATTCTATCTGAAAAAGCAAGCTGA 3021 0.4293 MEGLKLGHTLQNSHGLNLLVQIPNSSLVSRPSFPIQPKCNLALSTGCRVYAGSIIRKLALISPSGLPCGHSNLKQTREVRFTTRSTSASIQPMTEELVEDKSKDLPTSGDSIRHRFLDFYASRGHKVLPSSSLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQRCIRTNDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRLWISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHPERGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYVARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELKREELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAAEERGVGIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSADLTENISDTEFLGYETLSTKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAESGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDANLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEELINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVTTRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSLKSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSGALEKAREELVAILSEKAS* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0292 1006 Gene3D - 890 997 - -
Vvi3g0292 1006 Pfam tRNA synthetases class II (A) 112 674 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi3g0292 1006 Pfam DHHA1 domain 852 996 IPR003156 GO:0003676
Vvi3g0292 1006 Hamap Probable alanine--tRNA ligase, chloroplastic. 99 1003 IPR027522 GO:0009507
Vvi3g0292 1006 NCBIfam alanine--tRNA ligase 112 980 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 FunFam Alanine--tRNA ligase 744 797 - -
Vvi3g0292 1006 Gene3D Bira Bifunctional Protein; Domain 2 107 340 IPR045864 -
Vvi3g0292 1006 FunFam Alanine--tRNA ligase 106 340 - -
Vvi3g0292 1006 FunFam Alanine--tRNA ligase, cytoplasmic 673 831 - -
Vvi3g0292 1006 Gene3D - 559 672 - -
Vvi3g0292 1006 SUPERFAMILY ThrRS/AlaRS common domain 672 830 IPR018163 GO:0000166
Vvi3g0292 1006 SUPERFAMILY Translation proteins 568 672 IPR009000 -
Vvi3g0292 1006 Gene3D - 683 818 - -
Vvi3g0292 1006 Coils Coil 838 872 - -
Vvi3g0292 1006 PRINTS Alanyl-tRNA synthetase signature 399 412 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 PRINTS Alanyl-tRNA synthetase signature 375 391 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 PRINTS Alanyl-tRNA synthetase signature 175 186 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 PRINTS Alanyl-tRNA synthetase signature 297 308 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 PRINTS Alanyl-tRNA synthetase signature 324 337 IPR002318 GO:0000166|GO:0005737
Vvi3g0292 1006 FunFam Alanine--tRNA ligase 888 997 - -
Vvi3g0292 1006 CDD AlaRS_core 110 339 - -
Vvi3g0292 1006 SMART tRNA_SAD_4 773 816 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi3g0292 1006 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 344 575 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vvi3g0292 1006 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 773 816 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi3g0292 1006 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 107 829 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vvi3g0292 1006 FunFam Probable alanine--tRNA ligase, chloroplastic 558 672 - -
Vvi3g0292 1006 Gene3D - 744 797 - -
Vvi3g0292 1006 Gene3D - 820 881 - -
Vvi3g0292 1006 Hamap Alanine--tRNA ligase [alaS]. 108 1001 IPR023033 GO:0004813
Vvi3g0292 1006 PANTHER ALANYL-TRNA SYNTHETASE 101 996 - -
Vvi3g0292 1006 SUPERFAMILY Class II aaRS and biotin synthetases 109 343 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0292 Vvi-Chr3 2491906 2500092 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0292 K01872 - vvi:100255425 1950.25