Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0290 ATGGAGGAGAAGGTTGTGTATTCCAGATTCAAGAGTGTCTGTGTCTTCTGTGGAAGCAGCACTGGCAAGAGAAACTGTTACAGAGATGCCGCCGTTGAATTAGGGCAAGAGCTGGTGGCGAGGAGGCTGGACCTTGTGTATGGAGGTGGGAGTATTGGCTTGATGGGTCTGGTTTCTCAAGCTGTTCATCGTGGTGGAGGACATGTTCTTGGGATCATTCCCAGAACTCTGATGTGCAAAGAGATAACAGGAGAGACGGTTGGAGAGGTCAGGCCTGTGGCCGACATGCACCAAAGAAAAGCAGAAATGGCCCGCCATTCTGATTGCTTCATTGCCTTACCAGGTCCCCATTTGCATAAACTGAAGCTACACTTTACTCTTTGTTTTCAATTCATTTCACATGAAACCAGCAACACCCTTCTGGCTTTTTCAGGTGGGTATGGAACTCTAGAGGAATTGCTGGAAGTCATCACCTGGGCACAGCTCGGAATCCATGACAAACCAGTGGGTTTGCTCAATGTGGATGGCTACTACAACTACCTGCTCACCTTCATTGACAAAGCAGTGGATGATGGCTTCATCAAGCCTTCACAGCGCCATATCATTGTGTCAGCTCCAAACGCCAAAGAGCTAGTCCAAAAGCTTGAGGTGGGTCTTGAGCAAATAACACCCAGTTTCTTTTCTCTTCCTTTTCTTTTTCTTTTTCTAAATCTTGGATTAAAACATAAGTGGAAAAGACAATCCGGAGATGAAGAGAGAGAATCTGGTCAGGTTACCATATTGATCTTTATCTCAGTGATGTTGTTTCCTTATGAATGA 819 0.4567 MEEKVVYSRFKSVCVFCGSSTGKRNCYRDAAVELGQELVARRLDLVYGGGSIGLMGLVSQAVHRGGGHVLGIIPRTLMCKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGPHLHKLKLHFTLCFQFISHETSNTLLAFSGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIIVSAPNAKELVQKLEVGLEQITPSFFSLPFLFLFLNLGLKHKWKRQSGDEERESGQVTILIFISVMLFPYE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0290 272 Gene3D - 2 217 - -
Vvi3g0290 272 Pfam Possible lysine decarboxylase 135 215 IPR031100 -
Vvi3g0290 272 Pfam Possible lysine decarboxylase 55 115 IPR031100 -
Vvi3g0290 272 NCBIfam Rossman fold protein, TIGR00730 family 11 115 IPR005269 GO:0009691|GO:0016787
Vvi3g0290 272 PANTHER LOG FAMILY PROTEIN YJL055W 7 217 - -
Vvi3g0290 272 SUPERFAMILY MCP/YpsA-like 7 115 - -
Vvi3g0290 272 SUPERFAMILY MCP/YpsA-like 134 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0290 Vvi-Chr3 2476222 2477403 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0290 K22522 - vvi:100264122 357.451