Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0288 ATGGGGTTGTGGGCATTGGTAGCTTTCTGTCTGTTGTCATTAATACTGGTTGGCTCAGCAGAGCAATGTGGAGGGCAAGCTGGGGGTAGAGTTTGCCCAGGGGGGGCATGCTGCAGCAAGTTTGGTTGGTGTGGCAACACTGCTGATTACTGTGGCAGTGGCTGCCAAAGCCAGTGCAGTTCCACTGGTGACATTGGCCAGCTTATTACCAGGTCCATGTTCAATGATATGCTTAAGCATAGAAATGAGGGGAGTTGCCCTGGCAAGGGCTTCTACACCTATGACGCTTTCATAGCTGCTGCTAAGGCCTTTCCTGGCTTTGGAACAACTGGTGATACCACTACTCGTAAAAGGGAAATCGCAGCCTTCTTGGCTCAAACTTCTCATGAAACCACTGGGGGGTGGGCTAGTGCACCTGATGGCCCATACGCTTGGGGATACTGCTACCTCAGGGAACAAGGCAGCCCCGGAGCTTACTGTGTTCCTAGTGCACAGTGGCCTTGTGCCGCTGGTAGGAAATACTATGGCCGAGGCCCCATACAGATTTCCTACAACTACAACTATGGGCAAGCTGGGAAAGCCATAGGGGTAGACCTGGTAAACAACCCTGATCTAGTAGCAACAGATGCAGTCATATCATTCAAGACAGCCTTCTGGTTCTGGATGACACCCCAGTCACCCAAGCCTTCCTGCCATAATGTCATCACAGGAGGATGGACCCCATCAGGTGCAGATAGGTCAGCAGGGCGGCTTCCCGGTTTTGGTGTTATCACAAACATCATCAATGGAGGTGTTGAATGTGGGAAAGGGGTAGTTCCTCAGGTCCAGGACCGCATAGGTTTCTATAAGAGGTACTGTGATATACTTAGGGTTAGCTATGGCAACAACCTGGACTGCAACAACCAAAGGCCTTTCGGGTCTGGCCTCCTGCTGGACACCATCTAA 945 0.5153 MGLWALVAFCLLSLILVGSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0288 314 SUPERFAMILY Lysozyme-like 64 306 IPR023346 -
Vvi3g0288 314 CDD ChtBD1_GH19_hevein 21 60 - -
Vvi3g0288 314 Gene3D Endochitinase, domain 2 151 208 - -
Vvi3g0288 314 Gene3D - 73 305 - -
Vvi3g0288 314 ProSitePatterns Chitinases family 19 signature 1. 86 108 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vvi3g0288 314 SUPERFAMILY Plant lectins/antimicrobial peptides 22 63 IPR036861 GO:0008061
Vvi3g0288 314 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Vvi3g0288 314 Pfam Chitin recognition protein 22 59 IPR001002 GO:0008061
Vvi3g0288 314 ProSiteProfiles Chitin-binding type-1 domain profile. 20 61 IPR001002 GO:0008061
Vvi3g0288 314 Pfam Chitinase class I 68 299 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vvi3g0288 314 Gene3D - 20 62 IPR036861 GO:0008061
Vvi3g0288 314 PIRSF Endochitinase 2 306 IPR016283 GO:0004568|GO:0005975
Vvi3g0288 314 SMART ChitinBD_3 22 59 IPR001002 GO:0008061
Vvi3g0288 314 PANTHER CHITINASE-RELATED 8 303 - -
Vvi3g0288 314 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Vvi3g0288 314 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Vvi3g0288 314 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Vvi3g0288 314 ProSitePatterns Chitinases family 19 signature 2. 212 222 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vvi3g0288 314 FunFam Endochitinase (Chitinase) 151 208 - -
Vvi3g0288 314 CDD chitinase_GH19 69 299 - -
Vvi3g0288 314 FunFam Basic endochitinase 20 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0288 Vvi-Chr3 2462698 2463948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0288 20 314 Glycoside Hydrolase AT3G12500 67.657 4.48e-152 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0288 K20547 - vvi:100232985 637.876