Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0268 ATGGCGGTTATGCAACTGAATGGTGGTGTTCTTGCTACTGGATTGACAAGTACGGGGAGTGGAGGGGGTGTGATAAAGAAGATTACAGGGTCCTCTGTTGTGGTACAGCCAAGTGGAGAACACAATGCATTTGCACTTATTAAAAGCAAAGGGTTAAGATATGAAGATGTTACTAGATGTCATCATCAATCTCTAGACCTTCTAAGGCCATTCTCTCCATTGGTGACATGCCGTAGGAAACATGTCTTTCCTGTGTTCAATAATCACCTTGGATCGGATTGTGGTGTGGATTCTTCAGAGGTGGAAGAGAACATTGTTGTGGAAAAGGGGAATGATATTGGCAAATCAAGTGAAGTCCGTGAATTGAAAGGGATTACTGCAACTTTATCACGTTCTTTGGGAGTCAAACGTGAGCTCATTATGCTTTCTTTGCCTGCAATGGCTGGACAGGCTCTTGATCCTTTGGCACAACTGATGGAGACAGCTTATATTGGTAGATTGGGCCCTGTGGAGTTGGCTTCTGCTGGTGTTTCCATATCAATATTCAACATTATATCAAAGCTATTTAACATTCCTCTCCTGAGTATTTCCACTTCGTTTGTGGCTGAAGACATCTCAAAGAATGCTATCAACAATTCAGCCTCAGAAGAGTTTTATCAAGAAGAAAGTACAAATGGAACTCCTTTTGTTGGAGTAACTGAAAGAATGCAGCTATCATCTGTTTCTACGGCTTTACTTTTAGCTGTTGGTATTGGCATCTTTGAGGCTTTTGCCTTGTATTTTGGATCAGGATGGTTCCTTAACTTGATGGGCATACCATTGGCTTCATCCATGCATGCTCCAGCACGTAGATTTCTTTCACTCAGAGCCCTTGGAGCTCCTGCAGTTGTTGTTTCTTTGGCTCTTCAAGGCATTTTACGTGGTTTTAAGGATACAAAGACCCCGGTCTTATGTCTAGGTGTTGGTAATTTTGCAGCTGTCTTTTTGTTCCCCATACTTATGTATTATTTTCAATTGGGTGTTACTGGAGCTGCCATTTCCACTGTTGTGTCTCAATACATTGTCACCTTTTTAATGATTTGGCACCTTAATAAGAGAGCTGTATTGTTGCCCCCAAAGATGGGAACACTGCAATTTGGTGACTATATCAAATCTGGTGGTTTTCTTCTTGGGAGAACTCTTGCTGTCCTTGCAACTATGACCTTGGCAACATCAGTGGCGGCTCGTCAAGGCCCAATAGCAATGGCCGGCCATCAAATATGCTTGCAAGTATGGTTGGCTGTTTCGCTCCTCACTGATGCACTGGCTGCATCTGCTCAGGCCATGATTGCAAGTTCTTTATCGAAAGGTGACTACAAGGCTGTGAAAGAAATTACCTACTTTGTATTAAAGACAGGATTATTCACTGGTATTTTCTTGGCTGTGGCTTTGAGTGCATTTTATGGTTCCTTAGCCACCATATTCACCAAGGACATTGAAGTGTTAGGAATTGTTAGGACTGGGGTACTGTTTGTCTGTGCCAGTCAACCTATAAATTCTTTAGCTTTTATTTTTGATGGCCTCCATTTTGGTGCATCAGACTTCCCATATGCTGCTCGCTCTATGATGGTCATTGGGGCAATATGTTCTGCCTTTTTGCTTTATGTTCCTTCTCTACTTGGTCTTCAAGGAGTTTGGCTGGGCTTGACTCTCTTTATGGGCTTGCGTATGGTGGCAGGAGTGATCAGATTAGCATCGAAAACTGGTCCATGGTGGTTCCTGCATGAGGACTTCCAGATGGCAGAGGTGATGAATTTTGGATCTAAAACCGCCTAA 1815 0.4287 MAVMQLNGGVLATGLTSTGSGGGVIKKITGSSVVVQPSGEHNAFALIKSKGLRYEDVTRCHHQSLDLLRPFSPLVTCRRKHVFPVFNNHLGSDCGVDSSEVEENIVVEKGNDIGKSSEVRELKGITATLSRSLGVKRELIMLSLPAMAGQALDPLAQLMETAYIGRLGPVELASAGVSISIFNIISKLFNIPLLSISTSFVAEDISKNAINNSASEEFYQEESTNGTPFVGVTERMQLSSVSTALLLAVGIGIFEAFALYFGSGWFLNLMGIPLASSMHAPARRFLSLRALGAPAVVVSLALQGILRGFKDTKTPVLCLGVGNFAAVFLFPILMYYFQLGVTGAAISTVVSQYIVTFLMIWHLNKRAVLLPPKMGTLQFGDYIKSGGFLLGRTLAVLATMTLATSVAARQGPIAMAGHQICLQVWLAVSLLTDALAASAQAMIASSLSKGDYKAVKEITYFVLKTGLFTGIFLAVALSAFYGSLATIFTKDIEVLGIVRTGVLFVCASQPINSLAFIFDGLHFGASDFPYAARSMMVIGAICSAFLLYVPSLLGLQGVWLGLTLFMGLRMVAGVIRLASKTGPWWFLHEDFQMAEVMNFGSKTA* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0268 604 Pfam MatE 240 327 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g0268 604 Pfam MatE 400 548 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g0268 604 CDD MATE_DinF_like 137 579 IPR044644 -
Vvi3g0268 604 NCBIfam MATE family efflux transporter 145 559 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi3g0268 604 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 112 589 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0268 Vvi-Chr3 2314226 2331028 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0268 K03327 - vvi:100267546 1134.78