Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0242 ATGTCGAGGAGGAGGTCTACAACGAGTCTGGACAGAGCAGTCGTCGACGTTTGGCAGCGGGAGGTCGGCGGGCTCCCCAACAGAAGCTTCGCGCATCGCCTCGCCGCTTCTAAGGATCTTGTGCTTCAATTTGATATCTATAGGAAGCTGGAAAAGCACAGAGGTTGTGTGAACACAGTAAGCTTCAATGCAGATGGTGAAATTCTTGTGTCAGGCTCTGATGACAGGCGGATTATACTATGGGATTGGGAATCTGGGCATGTCAAACTTTCATTTGAATCTGGTCATATTAACAATGTTTTCCAAGCAAAGTTCATGCCTTACACAGATGATCGAAGCATTGTTACTTGCGCAGCAGATGGCCAGGTGAGGCGTGCTCAGATTCTAGAAAGTGGGCGGGTTGAGACTACTTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATTGAAGAAAGGAGGAGGGGATTGCGGGCCGTTGTCCAACTAAATGCGATTGCAATAGATCCAAGGAATTCAAATCTGTTTGCTGTTGCAGGGTCAGATGAATATGCTCGACTTTATGATATCCGCAAATATAAGTGGGATGGATCTACTGATTTTGATCAACCCATAGACTTCTTTTGCCCTTCACATTTGATTGGTAATCCATATGTGGGAATAACAGGCCTGTCCTTCTCAGACCAGAGAGAGCTTCTTGTGTCCTACAATGATGAGTTCATCTATCTTTTCACAAAGGATATCGGATTGGGACCTGACCCTATTCCAGCTTCTCCAGCTTCTTTGGGCAGTGGTGCAGATCATCCCTTGGAAGCATCAACTATGGATACTGATGACAATGTTTCTCCCCAAGTCTACAAGGGGCACAAAAATTGTAAGACAGTGAAGGGTGTAGGCTTCTTTGGGCCTAAATGTGAGTATGTGGTGAGTGGGTCAGACTGTGGCCGCATATTCATTTGGAAGAAGAGTGGGGAGCTCATTCGTGTAATGGAAGCTGATCAGCATGTGGTCAACTGTATCGAGTCTCATCCTCATGCTACAGTGCTTGCCAGCAGTGGAATTGAGAAAGACATCAAGATATGGACTCCGAAGGCTACTGAGAAAGCTATCCTGCCTAAAACAATTGAACGGGTTATGACACCAGCTAGATTTCATCGTTACTTTGCCTTTGACGATGATAACAATTATTTCTATGGCGATGATGATGATGATGACGACGATGATAATGATAATGATGATGATGATGATGATGATGATGATGACGATGATGACGACGACGACGACGACGATGCTGAAGATGGTGATGATGAGGAGGAGGACGACGACAATGGTGATGATGATGATGATGATGATTACAATGACAACATTGATGATGATGATGGTGGTGGTGGTGGTGGTGGCATTGATGATGTTGGTGATGACCATGACGATGATGGGGATGATGATTTTGTTGGTGATTTTTGTGATGCTATTGATGATTTGTGA 1596 0.4499 MSRRRSTTSLDRAVVDVWQREVGGLPNRSFAHRLAASKDLVLQFDIYRKLEKHRGCVNTVSFNADGEILVSGSDDRRIILWDWESGHVKLSFESGHINNVFQAKFMPYTDDRSIVTCAADGQVRRAQILESGRVETTLLAKHQGRAHKLAIEPGSPYIFYTCGEDGLVQHIDLRSRAATELLTCHQIEERRRGLRAVVQLNAIAIDPRNSNLFAVAGSDEYARLYDIRKYKWDGSTDFDQPIDFFCPSHLIGNPYVGITGLSFSDQRELLVSYNDEFIYLFTKDIGLGPDPIPASPASLGSGADHPLEASTMDTDDNVSPQVYKGHKNCKTVKGVGFFGPKCEYVVSGSDCGRIFIWKKSGELIRVMEADQHVVNCIESHPHATVLASSGIEKDIKIWTPKATEKAILPKTIERVMTPARFHRYFAFDDDNNYFYGDDDDDDDDDNDNDDDDDDDDDDDDDDDDDDDAEDGDDEEEDDDNGDDDDDDDYNDNIDDDDGGGGGGGIDDVGDDHDDDGDDDFVGDFCDAIDDL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0242 531 MobiDBLite consensus disorder prediction 434 495 - -
Vvi3g0242 531 SMART WD40_4 85 127 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 43 82 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 316 358 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 131 172 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 243 282 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 190 226 IPR001680 GO:0005515
Vvi3g0242 531 SMART WD40_4 360 399 IPR001680 GO:0005515
Vvi3g0242 531 MobiDBLite consensus disorder prediction 434 521 - -
Vvi3g0242 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Vvi3g0242 531 SUPERFAMILY WD40 repeat-like 42 398 IPR036322 GO:0005515
Vvi3g0242 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 82 - -
Vvi3g0242 531 Gene3D - 36 401 IPR015943 GO:0005515
Vvi3g0242 531 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 13 478 IPR045151 -
Vvi3g0242 531 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Vvi3g0242 531 Pfam WD domain, G-beta repeat 48 82 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0242 Vvi-Chr3 2066890 2081243 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0242 K11804 - vvi:100251996 873.618