Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0241 ATGGAGAAGTTGGCAGGCCTGACACACCTCTTCGTGACGGTTTTGCTGGGGAGTTTCTCCGCCTTCATAGTGATTCCGGCCATTACTGACGTCACCATGTCTGCGCTCTGCCCCGGTAAAGACGAATGCTCTCTCGCCATTTACCTCTCTGGTTTCCAGCAGGCGATTATAGGACTGGGAACCGTTGTGATGACACCTGTAATTGGGAATTTGTCTGATGAATATGGAAGGAAGGCTCTGCTCACAATTCCAATGGCCCTCTCCATCATTCCCTTGGCTATATTGGCATATAGCAGGACTACCACCTCCTTCTACGCATACTTTGTGATCAGGACTCTTACTGCCATGGTTGGTGAAGGCAGTATAAACTGCCTTGCTCTCGCATATGTGGCAGACAACATTTCAGAAGGCCAACGAGCCTCAGCTTTCGGAGTTCTATCTGGGGTAGCATCTGCTGCCTTTGTCTGTGGAACCCTAGCCGCCCGCTTCCTCTCCACTGCCTCCACCTTTCAGGTTGCCACCCTTGTATCGATGATTGCAACCGTTTACATGAGAGTTTTCCTCAAGGAGACTTTCCCCAAAGGCGATTCTTCACAGGCATTATTGAAAAAAGAACCGGGTATGAGTCCTGACGATGGTAACTCATCGGAGAAGATACAGACATTCAAGAAAATTCCATCTGTTGGAGACCTGATCAGCTTGTTGAAGTGCAGGGCGGCATTTTCACAGGCTGCAGTCGTCGTCTTCTTCAACGGTCTTGCAGAGGGTGGCCTCCAGGCCTCACTGTTGTACTTCTTGAAGGCTCGGTTTCACTTCAACAAAAACCAGTTTGCAGACATAATGCTAATCGTTGGGGTCATGGGGACCATTTCACAACTGCTTTTCATGCCCTTGTTGGCGCCTCGAGTATCAGAAGAGAAGTTGCTCTCTATAGGGCTCTTCATGGGATGCACAAACATATTTCTCAACAGCATCGCTTGGTCATTCTGGGTCCCATATGCCATTGCTGCGTTGGCTGCTTTTGCAGTATTTGCTAACCCTTGTGTACGAAGCATCGCATCGAAGCAAGTAGGCCCCAATGAGCAGGGAAAGGCTCAAGGCTGTATATCAGGCATAAGTTCCTCAGCCCAGATAATTTCTCCCTTGATCTTTAGTCCTCTAACAGCTCTATTCTTATCTCAAGGAGCACCATTTTATTTTCCTGGTTTCAGCATCATGTGCATTGGATTTGCTTCAATGATCGCCTTCATTCAGAGTACTATGATAAGGGCTGTTCCTCCTATTTCAAGTCAGCCAACCAGCAACAGCATCGAGGCCTAG 1320 0.4833 MEKLAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGLGTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGEGSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMIATVYMRVFLKETFPKGDSSQALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLLKCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLFMPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASKQVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIAFIQSTMIRAVPPISSQPTSNSIEA* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0241 439 ProSiteProfiles Major facilitator superfamily (MFS) profile. 10 421 IPR020846 GO:0022857
Vvi3g0241 439 PRINTS Tetracycline resistance protein signature 330 350 IPR001958 GO:0022857
Vvi3g0241 439 PRINTS Tetracycline resistance protein signature 56 72 IPR001958 GO:0022857
Vvi3g0241 439 PRINTS Tetracycline resistance protein signature 305 326 IPR001958 GO:0022857
Vvi3g0241 439 PRINTS Tetracycline resistance protein signature 365 388 IPR001958 GO:0022857
Vvi3g0241 439 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 7 419 - -
Vvi3g0241 439 Pfam Major Facilitator Superfamily 10 381 IPR011701 GO:0022857|GO:0055085
Vvi3g0241 439 CDD MFS_SLC46_TetA_like 10 419 - -
Vvi3g0241 439 Gene3D MFS general substrate transporter like domains 5 422 IPR036259 -
Vvi3g0241 439 SUPERFAMILY MFS general substrate transporter 13 414 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0241 Vvi-Chr3 2060881 2065849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0241 2 426 Organic Solute Cotransporters AT2G16990 47.032 1.81e-127 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0241 - - vvi:100257341 822.002