Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0239 ATGGCAAGATGGTCTCAACTCCCCAAAGACCTCCTTCTCCTAATTGCCCAGCGCCTGAATACCCATTTCGATCTCCTCTGTCTCCGATCAGTCTGCTCCTCCTGGCATGCTTGTGTCCCCTCCAGACCCCACCCACTCCCTTCCCGTTTCCCGATCCTTCCCACCAATGGAACCTCCTGGGGTTTATATCTTTCTAGGCGCACAATTCTGTGTCTTGGATTACCTGAATCTCACTGCCAACCCACCATCGGCTCCTGGCTGATCAAAGTTGAAGAAGATGTCCCTGATATGGCACACCTGGTGAACCCACTCTCCACATTTCAATTCAAACATCTTCCACCAAATTTCCCAAAAACTTTTGACTTTTCCAGGTTTCGGGTCTCTGAATTAGGGCAAGAGTATGTCCTTCAGTACATGAATCATCGTCCATCTGGAGAGGCTGATGAGGGGAGCTTGCACAAGGGTAAGGTTGCTTTTTCTAGCACCAGCAATGGTGAAGATTTTGTAATGCTTACAATTCATGTGTCTGGAAAATTGGCCATGTTTAGGCATGGAAACAAAAGGTTGAAAACAATTGATGATATGCCATCTTGTGATGATTTGATATTCTTTAATGGAGAATTCTATGCCGTTGATAACACTGGAAGGACTGTAGTTGTGGCCATTGGATCACCTCCAGTTCTAAGTTTGATCGCTGACTCAGTGATTGGTGGCAACAAGAAGAGCTTGGTTGAGTCCAATGGCGAATTGTTGATGGTCAACACATACTTTGATCAAGGGATTCATGGCATAATGAATAGAGCAGTCCGGTTTAAGGTTTTCAAGCTAAATCAAATTGGGCATATGTGGGTTGAGGTTGAAAACTTGGGTGATCGAATCCTGTTTTTGGGTGAGAAAAGTACATTCTCAGCTGTGGCTTCTGAATTTTGTGGGTGTGAAGGGAACTGTATTTATTATACAAACAGCTTCTTCTTCCCAAATGACCAAGAAGATGATGCATATACAGGAATAGGTATATTCAACTTAGAGAATGGTAATTTGGGGCCTTTATCGAGTTTTCCCAATTATTCCAAGGTGATTTGGTCACCGCCAGCTTGGGTTTATATCGATAATATCGGAGATATATGA 1128 0.4371 MARWSQLPKDLLLLIAQRLNTHFDLLCLRSVCSSWHACVPSRPHPLPSRFPILPTNGTSWGLYLSRRTILCLGLPESHCQPTIGSWLIKVEEDVPDMAHLVNPLSTFQFKHLPPNFPKTFDFSRFRVSELGQEYVLQYMNHRPSGEADEGSLHKGKVAFSSTSNGEDFVMLTIHVSGKLAMFRHGNKRLKTIDDMPSCDDLIFFNGEFYAVDNTGRTVVVAIGSPPVLSLIADSVIGGNKKSLVESNGELLMVNTYFDQGIHGIMNRAVRFKVFKLNQIGHMWVEVENLGDRILFLGEKSTFSAVASEFCGCEGNCIYYTNSFFFPNDQEDDAYTGIGIFNLENGNLGPLSSFPNYSKVIWSPPAWVYIDNIGDI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0239 375 SUPERFAMILY F-box domain 3 42 IPR036047 GO:0005515
Vvi3g0239 375 Pfam Protein of unknown function (DUF295) 284 342 IPR005174 -
Vvi3g0239 375 PANTHER F-BOX PROTEIN SKIP23 1 364 - -
Vvi3g0239 375 Pfam F-box domain 4 39 IPR001810 GO:0005515
Vvi3g0239 375 Gene3D - 4 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0239 Vvi-Chr3 2049121 2050248 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0239 - - vvi:100265942 781.941