Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0235 ATGGCTTCAACCTTCCCTCACACCTACTTCTACAATTCCAAACGACCCAGAAACGCTTCGAGGGAAAAACGAGCCCGAACCCCACAAACAAACCCGGACACTGACCTAATACTGAAGCCACGGATCTTCAAAACAGCCCGAAGTAAGAGAAATCAATCGTTTTTGGTTGAACGAAACAGTGTCTCGCTCACTAGAGCTCTTTCCTCGTATGTGGAACGTGGGTACATGAAGAATGCACTCGACCTGTTTGAGAATATGCGTCAGTGTGATACTTTCATTTGGAATGTGATGATTAGAGGGTTTGTTGATAATGGATTGTTTTGGGATGCGGTTGATTTTTACCATAGAATGGAATTCGGAGGGGTTAGAGGTGATAATTTCACTTACCCGTTTGTGATAAAGGCGTGTGGTGGGTTGTATGATTTGGCAGAAGGAGAGAGGGTTCATGGGAAAGTGATTAAGAGTGGGTTGGATTTGGATATTTATATTGGGAATTCACTTATTATTATGTATGCGAAGATTGGGTGTATTGAGTCTGCGGAGATGGTGTTCCGGGAAATGCCTGTTAGGGACTTGGTTTCTTGGAATTCTATGATTAGTGGGTACGTTTCAGTTGGGGATGGTTGGAGATCACTGTCGTGTTTTCGTGAAATGCAAGCATCTGGTATTAAACTGGATAGGTTCAGTGTGATTGGCATACTTGGTGCTTGTTCGCTTGAGGGTTTTCTGCGAAATGGGAAGGAAATTCACTGCCAAATGATGCGAAGTAGGCTTGAATTGGATGTCATGGTTCAGACATCACTGGTAGACATGTATGCAAAATGTGGTAGGATGGATTATGCAGAGAGGTTGTTTGATCAAATTACTGATAAAAGCATTGTGGCATGGAATGCTATGATAGGTGGATATTCTCTAAATGCACAATCCTTTGAGTCATTTGCTTATGTGAGAAAGATGCAGGAGGGTGGAAAATTGCATCCTGATTGGATTACAATGATAAACTTGCTCCCTCCTTGTGCACAGTTAGAAGCAATCTTGCTGGGTAAATCTGTTCATGGCTTTGCAATTAGAAATGGGTTTCTCCCTCATCTGGTCTTGGAGACCGCTCTGGTAGATATGTATGGAGAGTGCGGAAAGCTGAAACCAGCAGAATGTTTGTTTGGTCAAATGAATGAAAGGAATTTGATATCTTGGAATGCCATGATCGCTTCTTATACGAAAAATGGGGAGAACAGGAAGGCCATGACACTGTTCCAAGATCTTTGCAACAAGACTCTTAAACCAGATGCAACTACAATTGCTAGCATCCTGCCCGCCTATGCCGAGTTAGCCTCATTGAGAGAGGCAGAACAAATTCATGGTTATGTCACGAAATTGAAGCTTGATTCAAATACCTTTGTCTCTAATTCTATTGTTTTTATGTATGGAAAATGTGGGAATCTCCTGAGAGCAAGGGAAATTTTTGATAGGATGACTTTTAAGGATGTCATTTCATGGAACACGGTCATTATGGCTTATGCCATTCATGGGTTCGGGAGAATTTCCATTGAATTGTTCTCTGAGATGAGGGAAAAGGGCTTTGAACCTAATGGCAGTACTTTTGTTTCCTTGTTATTATCTTGTAGTGTTGCTGGCTTGGTCAATGAAGGGTGGGAATACTTCAATTCAATGAAAAGGGACTACAATATCAATCCGGGAATAGAGCATTATGGTTGTATACTTGATCTTATTGGTCGCACCGGGAATCTTGACCATGCCAAGAATTTCATTGAAGAAATGCCACTGGCTCCCACAGCCAGAATATGGGGATCTTTGTTGACTGCAAGTAGAAACAAAGGAGACGTAGAGTTAGCTGAAATTGCAGCTGAGCACATTTTATCCCTGGAACACGACAATACTGGTTGTTATGTCTTGCTTTCTAATATGTATGCTGAAGCGGGGAGGTGGGAAGATGTGGAGCGGATTAAATTTCACATGAAGAAAGAGGGATTAGAAAAATCAGTTGGATGTAGTGTGGTTGACCTCAGTAGTAAGACTTTCAGGTTCGTGAATCAAGATCGGTCCGACAATGAAATCAACATGGTCTATGATGTGTTAGATATCATCTCAAAGAAGATAGGAGAAGATGTTTATGTTCATAGTCTCACCAAGTTCAGACCATCTGATTTGGAGAAAAAAAGAGCAAACTCAGCAAAAAGTCACAGTTTGAGGTTAGCAATTTGCTTTGGCTTGATCTCAACAACTATTGGAAACCCTGTTCTTGTAAGAAAAAACATTAGAATATGTGAAGCTTGCCATAGATTTGCAAAGAGGATTTCAGAGACAACTAAAAGAGAGATAATAGTCAGGGATTCAAAGATCTTTCACCACTTCAATGGTGGGCATTGTTCATGTGGAGATTATTGGTGA 2409 0.4118 MASTFPHTYFYNSKRPRNASREKRARTPQTNPDTDLILKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0235 802 Gene3D Tetratricopeptide repeat domain 474 689 IPR011990 GO:0005515
Vvi3g0235 802 Pfam PPR repeat 66 89 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat 165 190 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat 193 223 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat 266 291 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat 294 323 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat 469 492 IPR002885 -
Vvi3g0235 802 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g0235 802 Pfam DYW family of nucleic acid deaminases 725 802 IPR032867 GO:0008270
Vvi3g0235 802 FunFam Pentatricopeptide repeat-containing protein 146 241 - -
Vvi3g0235 802 FunFam Uncharacterized protein 349 460 - -
Vvi3g0235 802 Pfam E motif 614 673 IPR046848 -
Vvi3g0235 802 Gene3D Tetratricopeptide repeat domain 245 348 IPR011990 GO:0005515
Vvi3g0235 802 Gene3D Tetratricopeptide repeat domain 33 139 IPR011990 GO:0005515
Vvi3g0235 802 Gene3D Tetratricopeptide repeat domain 140 244 IPR011990 GO:0005515
Vvi3g0235 802 Gene3D Tetratricopeptide repeat domain 349 452 IPR011990 GO:0005515
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vvi3g0235 802 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 57 439 IPR046960 GO:0003723|GO:0009451
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Vvi3g0235 802 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 26 145 - -
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vvi3g0235 802 FunFam pentatricopeptide repeat-containing protein At2g33680 468 694 - -
Vvi3g0235 802 Pfam PPR repeat family 494 540 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat family 90 136 IPR002885 -
Vvi3g0235 802 Pfam PPR repeat family 394 440 IPR002885 -
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi3g0235 802 NCBIfam pentatricopeptide repeat 193 226 IPR002885 -
Vvi3g0235 802 NCBIfam pentatricopeptide repeat 396 430 IPR002885 -
Vvi3g0235 802 NCBIfam pentatricopeptide repeat 93 123 IPR002885 -
Vvi3g0235 802 NCBIfam pentatricopeptide repeat 497 530 IPR002885 -
Vvi3g0235 802 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi3g0235 802 MobiDBLite consensus disorder prediction 1 35 - -
Vvi3g0235 802 FunFam Pentatricopeptide repeat-containing protein chloroplastic 246 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0235 Vvi-Chr3 2034767 2037175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0235 54 802 Glycoside Hydrolase AT3G49170 34.993 1.75e-147 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0235 - - vvi:100264174 1628.99