Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0233 ATGGGTGTAGAAAGAAACACCCCAAAAGCCTCTCCCAAGAAAAAACCTACCACCACCCTTCAGTACCTCTTTGATCTGGATTCTAAGAGCAATGGCAATGGCCATTTCAGCAACAGTGGGAAACAATCTTCTCTGGATTCCGAAAATGAAGAGCTCCTCTCTATCATCACATACTGCACCTTTGTCTTCACCTTTACTGATCCTTCTGAATCTCCTTCACAGCAAGATCTCAAGAGGCTCAAGCTCACTCAACTTCTCTCCCTTGTGAAGTCCACAAAGAAGCCACTCCATGATCAAATTTTGTCACATCTGGTTGCCATGCTATCTGCCAACCTCTTTCGCCCCCTCCCTCCATCTTCCAATGCCTCTGTCATCTTTGACTTACCTGATGAGGAAGACACCGCTTCTACTCCTGCACCTGCTTGGCCACACCTGCAAATTGTTTATGAGATTCTTCTTCGGCTAGTCCTCAACACAGATGCCAAGGCACTGCGTGATCATATAGATCATTCATTCGTTCTCAACCTCCTCTCCCTTTTCCAATCTGAAGACCCACGAGAACGGGAAAGCTTGAAGAACGTGTACCACAGGATATATTCCAAGTTCACCTTCTACCGATCATTCATGAGAAAAGCAATGAATGATGTATTCTTGCACTATGTTTTTGAGACAGAGCGGCCCTGTGGCATTGGCGATCTGCTTGAAATTTGGGGCAGCATAATCAATGGCTTCACCATTCCACTCAAGGAAGAGCACAAGTTATTCTTGATGAGAGTGCTTATTCCCTTGCACAAGCCCAAGGGGTTGCAGGTTTACCATAGGCAGCTGGCTTACTGTGTCTCCCAGTTTGTGCAGAAGGAGCCTGTGCTTGGTGGGATTGTTGTTCGAGGTATTCTAAAATATTGGCCGATCACAAACTGCCAGAAACAAGTTTTGCTTGTGGGAGAACTGGAAGAATTGGTGGAGATTATAGATCCTGAGCAATATAGGAAGTTGGCTCTGCCTTTATTCACCCAAATCACAAGGTGCTTAAACAGTTGGAACTCACAGGTAGCAGAGCGTGCCCTCTACGTATTGAACAACGAGCAGTTCAGGAAGATGGCACAAGAGGCAATGGACGAGGTGTTTCCAGTGATAGTTGAAGGCATGGAGAAGAACCTTAAATGGCACTGGAGCAAAAGCGTTCGCCAATTGACACAAACCGTGAAGGTGATGCTGGAAGAAATGGAGCCGTGTTTATACTCCAAGTGTGTAATAAACCTTGAACTCCGAGAATCTGCAGCTCAACAAGAGGAGATCAAAAGAAGAGAGAAATGGGAAAGGATTGAACGGGCTGCTGATGCTGCTACTGCTGCCCAGAATCAGTTCCTCCAACCACCACATTGTATATGTGTTTCCAACTGA 1404 0.4594 MGVERNTPKASPKKKPTTTLQYLFDLDSKSNGNGHFSNSGKQSSLDSENEELLSIITYCTFVFTFTDPSESPSQQDLKRLKLTQLLSLVKSTKKPLHDQILSHLVAMLSANLFRPLPPSSNASVIFDLPDEEDTASTPAPAWPHLQIVYEILLRLVLNTDAKALRDHIDHSFVLNLLSLFQSEDPRERESLKNVYHRIYSKFTFYRSFMRKAMNDVFLHYVFETERPCGIGDLLEIWGSIINGFTIPLKEEHKLFLMRVLIPLHKPKGLQVYHRQLAYCVSQFVQKEPVLGGIVVRGILKYWPITNCQKQVLLVGELEELVEIIDPEQYRKLALPLFTQITRCLNSWNSQVAERALYVLNNEQFRKMAQEAMDEVFPVIVEGMEKNLKWHWSKSVRQLTQTVKVMLEEMEPCLYSKCVINLELRESAAQQEEIKRREKWERIERAADAATAAQNQFLQPPHCICVSN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0233 467 SUPERFAMILY ARM repeat 50 442 IPR016024 -
Vvi3g0233 467 Gene3D - 46 445 IPR011989 -
Vvi3g0233 467 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 40 449 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi3g0233 467 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 45 444 - -
Vvi3g0233 467 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 44 446 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vvi3g0233 467 PIRSF PP2A_B56 23 462 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0233 Vvi-Chr3 2022219 2024081 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0233 K11584 - vvi:100247024 876.7