Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0231 ATGAACTATAAAATTGCCCCCAGTCCCCATCCCAAAAATCCTACCATTTTTTCTCTCTTCCCTTTCTACTGTCTCTCTCTCTCTCTCACAGCCAAAACCTCTGAACCTGTCCAGAAGCTAAATCTCTCTCTCTCTCTCTTCCCTCAAAACATGGCGGCGACAGCCTCGTGGCAGCCTCAAGAGGAAGGCTTCAATTCGATCTGTGCCCTACTCCAACACCAAATCTCTCCTTCCTCCGATAAGTCTCAGATTTGGCAGCAGCTCCAGCACTTCTCTCACTTCCCCGATTTCAACAACTACCTCGTCTTCATTCTCGCCCGCGCTGAGGGTCAATCAGTGGAGGTTCGACAGGCTGCTGGTTTACTTCTGAAAAATAACCTTAGAACCGCATTCAATTCCATGACTCCTGCATACCAGCTCTATATAAAATCAGAGCTGTTGCCCTGTTTAGGGGCGGCAGATAGGCACATTAGGTCTACAGCTGGAACCATTATAACTGTACTTGTTCAGCTGGGGGGAGTTTCTGGATGGCCTGAGCTCTTGCAAACTCTTGCTAATTGCTTGGAAAGTAATGACTTAAATCATATGGAAGGTGCTATGGATGCTTTGTCTAAGATCTGTGAGGATGTTCCTCAAGTGCTTGATTCAGATGTGCCTGGGTTAGTTGAACACCCCATCAACTTATTTCTTCCGAAATTATTCCAGTTTTTTCAATCACCACATGCCTCACTAAGAAAGCTTTCATTGGGTTCCGTAAACCAGTACATTATGTTGATGCCCGCTGCATTATTTGCTTCCATGGATCAATATCTTCAAGGTTTGTTTGTTCTCGCTCATGACTCTGCTGCAGAGGTTCGGAAATTGGTTTGTGCAGCATTCGTGCAGCTAATTGAAGTTAATCCATCTTTCTTGGAGCCGCATTTGAGGAATGTAATCGAGTACATGCTACAAGTCAATAAGGATAGTGATGATGAAGTGGCTCTTGAAGCTTGTGAATTTTGGTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCAGTTTTATTATCAAATATGGCTTATGCTGAAGATGATGAATCACTTGCTGAAGCTGAGGAGGATGAGTCTCTTCCGGACCGCGATCAGGATTTGAAACCTCGCTTTCATTCTTCTCGGTTTCACGGATCAGATAATGCAGAAGATGATGATGATGACATAGTCAACATTTGGAATTTACGGAAATGCAGTGCAGCTGGGCTAGATGTTCTCTCAAATGTGTTTGGGGATGAGATTCTTCCAACAATGATGCCAATAGTGCAGGCTAAGTTATCAACTACTGATGATGAGACCTGGAAAGAAAGGGAAGCTGCCGTTTTAGCTCTTGGTGCTGTAGCTGAGGGTTGCATTACTGGTCTTTATCCTCATTTATCAGAGATTGTGACATTTATTATTCCCCTCTTGGATGATAAGTTTCCTCTCATACGAAGTATTTCCTGTTGGACACTTTCACGTTTCAGCAGATTTGTTGTTCAGGGTATTGGTCATCAGAAAGGCTCTGAACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGGAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGAGACGAAATCTCAGAATCGTATATGATGCTATTGCAACTTTAGCAGATGCTGTAGGAGAGAAACTAAATCAGCCCACCTATCTTGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGGCATTGGGTACCGGGTTTTCTCAATTTGCTGAGCCCGTCTTTCAGAGGTGCATAAACATCATCCAGACACAACAATTGGCAAAGATTGATCCTGCTTCAGCTGGTGTTCAGTATGATAAAGAGTTTATTGTATGCTCTCTCGACTTGCTGTCTGGACTTGCAGAAGGTCTTGGTAGTGGGATAGAGAGTTTGGTTGCGCAAAGCAGCTTGAGGGATCTCCTCCTGCAATGTTGTATGGATGATGATGCACCAGATGTTCGACAAAGTGCCTTTGCACTTCTGGGTGATCTGGCAAGAGTGTGTCCTGTTCATTTGCACCCTCGTTTGTCTGATTTTCTCAATGTTGCGGCCAAGCAACTGAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAGGTTCATCAAGAAGTTTCTCCAATTGTGATGACAGTTATCTCATGCTTAGTTCCGATACTTCAACATGCTGAGGAGCTCAACAAGTCACTCATAGAAAATAGTGCCATCACCCTTGGGAGGCTTGCTTGGGTCTGTCCAGAAATTGTGTCACTGCATATGGAGCATTTTATGCAATCATGGTGTACTGCTTTATCCATGATACGTGATGATATTGAAAAGGAAGATGCTTTCCGAGGCCTATGTGCCATGGTTAGAGCAAATCCATCTGGCGCCCTTAGTTCACTTGTTTACATGTGCAAAGCTATTGCAAGTTGGCATGAAATAAGGAGTGAGGACCTACACAATGAAGTTTGCCAGGTGTTGCATGGTTATAAACAGATGCTTAGGAATGGAGCATGGGAACAGTGCATGTCTGCCTTGGAACCTCCAGTGAAGGACAAGCTGTCAAAATATCAAGTATAG 2823 0.4382 MNYKIAPSPHPKNPTIFSLFPFYCLSLSLTAKTSEPVQKLNLSLSLFPQNMAATASWQPQEEGFNSICALLQHQISPSSDKSQIWQQLQHFSHFPDFNNYLVFILARAEGQSVEVRQAAGLLLKNNLRTAFNSMTPAYQLYIKSELLPCLGAADRHIRSTAGTIITVLVQLGGVSGWPELLQTLANCLESNDLNHMEGAMDALSKICEDVPQVLDSDVPGLVEHPINLFLPKLFQFFQSPHASLRKLSLGSVNQYIMLMPAALFASMDQYLQGLFVLAHDSAAEVRKLVCAAFVQLIEVNPSFLEPHLRNVIEYMLQVNKDSDDEVALEACEFWSAYCDAQLPLENLREFLPRLIPVLLSNMAYAEDDESLAEAEEDESLPDRDQDLKPRFHSSRFHGSDNAEDDDDDIVNIWNLRKCSAAGLDVLSNVFGDEILPTMMPIVQAKLSTTDDETWKEREAAVLALGAVAEGCITGLYPHLSEIVTFIIPLLDDKFPLIRSISCWTLSRFSRFVVQGIGHQKGSEQFDKVLRGLLRRILDTNKRVQEAACSAFATLEEEAAEKLAPHLEIILQHLMCAFGKYQRRNLRIVYDAIATLADAVGEKLNQPTYLDILMPPLIAKWQQLSNSDKDIFPLLECFTSIAQALGTGFSQFAEPVFQRCINIIQTQQLAKIDPASAGVQYDKEFIVCSLDLLSGLAEGLGSGIESLVAQSSLRDLLLQCCMDDDAPDVRQSAFALLGDLARVCPVHLHPRLSDFLNVAAKQLNTSKLKETVSVANNACWAIGELAVKVHQEVSPIVMTVISCLVPILQHAEELNKSLIENSAITLGRLAWVCPEIVSLHMEHFMQSWCTALSMIRDDIEKEDAFRGLCAMVRANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWEQCMSALEPPVKDKLSKYQV* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0231 940 PANTHER IMPORTIN BETA 70 916 IPR040122 GO:0006606
Vvi3g0231 940 Pfam HEAT repeat 714 743 IPR000357 GO:0005515
Vvi3g0231 940 MobiDBLite consensus disorder prediction 381 402 - -
Vvi3g0231 940 Pfam HEAT-like repeat 454 507 - -
Vvi3g0231 940 FunFam Transportin-1 54 940 - -
Vvi3g0231 940 SUPERFAMILY ARM repeat 57 933 IPR016024 -
Vvi3g0231 940 ProSiteProfiles Importin-beta N-terminal domain profile. 84 152 IPR001494 GO:0006886|GO:0031267
Vvi3g0231 940 Gene3D - 54 940 IPR011989 -
Vvi3g0231 940 MobiDBLite consensus disorder prediction 370 402 - -
Vvi3g0231 940 SMART IBN_N_2 84 152 IPR001494 GO:0006886|GO:0031267
Vvi3g0231 940 Pfam Importin-beta N-terminal domain 85 151 IPR001494 GO:0006886|GO:0031267
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0231 Vvi-Chr3 1980582 2017369 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0231 K18752 - vvi:100250435 1717.98