Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0226 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGAGGAAAAATCAATATACTTCTAATGTCGAATCAAGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAAAACTTAA 282 0.3652 MDGIKYAVFTDKSIRLLRKNQYTSNVESRSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKKT* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0226 93 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 85 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi3g0226 93 FunFam 50S ribosomal protein L23, chloroplastic 1 86 - -
Vvi3g0226 93 Gene3D - 1 86 IPR012677 -
Vvi3g0226 93 ProSitePatterns Ribosomal protein L23 signature. 73 88 IPR001014 GO:0019843
Vvi3g0226 93 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 87 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vvi3g0226 93 Pfam Ribosomal protein L23 4 85 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi3g0226 93 Hamap 50S ribosomal protein L23 [rplW]. 1 90 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0226 Vvi-Chr3 1949395 1949676 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0226 K02892 - vvi:4025136 186.422