Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0225 ATGGAGAATCTGAGAGAGTGGTTCAACAGAGTTGACTCAGAGAAAACCGGAAGCATCACTGCGACTCAGCTCAAGACAACTCTTGCCGTCGGGAACCTCGAATTCCCTCTCTCTATCGTTCAGCAAATGATCAGAATGTATGATTTTGATAAGAATGGGACTATGAACTTCCAAGAGTTTGTTGCGCTTAACAAGTTTCTTCTGAAGGTTCAACAAGCGTTTGCGGACCTAGAGAGGGGTCGTGGATTCCTTGTTCCTGATGAAGTTTATGAGGGATTGGTGAAAATTGGATTCTCCCTCGACTCTCCTGCTTTTTACACTGTCTGTGAGAGCTTTGATCACAAGAAGAATGGAAGATTCCGGTTGGATGACTTCATATCTCTCTGTATATTTATACAGTCTGCTCGGAATCTGTTTAATTCTTTTGATACTGCTAAGCAAGGCAGGGTGACCCTGGATCTCAACCAATTTGTTTACTGCACTGCAAATTGTAGAATATGA 501 0.4271 MENLREWFNRVDSEKTGSITATQLKTTLAVGNLEFPLSIVQQMIRMYDFDKNGTMNFQEFVALNKFLLKVQQAFADLERGRGFLVPDEVYEGLVKIGFSLDSPAFYTVCESFDHKKNGRFRLDDFISLCIFIQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0225 166 CDD EFh_PEF_ALG-2_like 3 164 - -
Vvi3g0225 166 Pfam EF hand 40 63 IPR002048 GO:0005509
Vvi3g0225 166 Gene3D - 1 164 - -
Vvi3g0225 166 PANTHER PEFLIN 3 164 - -
Vvi3g0225 166 SUPERFAMILY EF-hand 2 162 IPR011992 -
Vvi3g0225 166 ProSitePatterns EF-hand calcium-binding domain. 48 60 IPR018247 -
Vvi3g0225 166 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Vvi3g0225 166 ProSiteProfiles EF-hand calcium-binding domain profile. 35 70 IPR002048 GO:0005509
Vvi3g0225 166 SMART efh_1 39 67 IPR002048 GO:0005509
Vvi3g0225 166 SMART efh_1 3 31 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0225 3 128 EF-hand Containing Proteins AT5G04870 25.564 1.43e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0225 - - vvi:100265901 337.035