Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0209 ATGAGGGGTGTTAAATATTTCAGTAGCAGTCATGGTTTTGAGCTCAAAGTCCTCCATTTATTTGGGAAAGGAATACGGGCTGGGTTTATCCCTTATGATGCCAGCCAAGGTGACCCAGCTAAGGTGAAGCAGTTTGTACTGGACAATCTTGGGAAGGTCCCTGATGAGCTAAGAGAAATTGTAGAAAGCACTGTGTTGGAAACAATTATATCAGCAAGATTGAGATACAGAAAACCATGGGAGCTGCAGTGGGGGAGTATCAGCAAAGACAATGTCTGTGTGGTTGGTGATGCATTGCACCCCATGACACCAGACCTTGCCCAAGGGAGGTCTGCAGCCTTAGAAGATGACATAGTTTTAGTCAGGTGTCTTGCTGAAGCTTTGTCAAAGAAACCTGCAGGCAAGGAAATGCAAGACAGCTGA 423 0.4563 MRGVKYFSSSHGFELKVLHLFGKGIRAGFIPYDASQGDPAKVKQFVLDNLGKVPDELREIVESTVLETIISARLRYRKPWELQWGSISKDNVCVVGDALHPMTPDLAQGRSAALEDDIVLVRCLAEALSKKPAGKEMQDS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0209 140 SUPERFAMILY FAD/NAD(P)-binding domain 78 130 IPR036188 -
Vvi3g0209 140 Pfam FAD binding domain 55 129 IPR002938 GO:0071949
Vvi3g0209 140 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 1 131 IPR044560 -
Vvi3g0209 140 Gene3D - 14 139 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0209 Vvi-Chr3 1807914 1808417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0209 1 131 Miscellaneous Gene Families AT4G38540 41.096 1.98e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0209 - - vvi:109121486 276.174