Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0208 ATGACTCAAGATGTGGAAATGAAAGAGCTTCCAGCTCCTTCAAATTCTGTTACTTCTACTACTCCTTCAACACTGCAGCATTTGAAGGAGATAGCGTCACTCATCGAGAGCAGCGCGTATGCTCGGGAGGTTCGCCGCATTGTGCGCGCCATTCGGCTTACCATGATATTGAGGCGGAAGCTGAAGGCGACTGTGCTCTCTGGATTCCTAAATTATGCCCTTAACCCAGGATCGGAGGTGCACACCCGGTTGTCCTCGTATCTTCCCAAGGAAGATGAACATGACATGGAAGTTGATACTGCAACATCTGCAACTCAAACTCCTGCAAAACACCCCTTGCCAGAACTTGAGATTTACTGCTACTTGCTAGTTCTGATTTTTCTGATTGATCAGAAGAAGTACAAAGAGGCTAAAGCTTGTTCCGCAGCAAGCATCACACGGCTGAAGAATCTGAATCGGAGAACCATTGATGTTCTGGCATCCAGGCTTTATTCTTATTACTCTCTTAGCTATGAACTCACAGGTGATCTTGCTGAGATTCGAGGTAACCTCCTTGCCTTGCATCGGATTGCAACATTGCGCCATGATGAGCTGGGTCAGGAAACACTTCTAAACCTGCTTCTGCGTAATTACCTCCATTACAACTTGTATGATCAGGCTGAGAAACTGAGGTCAAAGGCACCTCGTTTTGAAGCTCATTCAAATCAGCAGTTTTGTCGCTACCTCTTCTACCTAGGAAAGATTAGGACAATTCAGTTGGAGTACACAGATGCAAAAGAGTCCCTCCTGCAAGCTGCTCGGAAAGCCCCTGTTTCAGCCCTTGGTTTTCGAGTTCAATGCAACAAGTGGGCTGTGATAGTCCGCCTCCTGCTGGGCGAAATCCCTGAAAGGACTGTTTTTATGCAGAAGGGCATGGAGAAGGCTTTGAGGCCCTACTTTGAGCTTACAAATGCTGTGCGAATTGGAGATCTGGAGCTCTTCAAGTCTGTTGCTGAGAAGTTCTCAACTACTTTCAGTTCAGATCGCACACACAATTTGATTGTTAGGCTGCGGCATAATGTCATAAGGACTGGGCTACGCAATATCAGTATCTCGTATTCTCGAATCTCACTGGCGGATGTTGCCCAGAAGCTGAGATTGGACTCTGCAAATCCTATTGCTGATGCTGAGAGCATTGTAGCCAAGGCAATACGAGATGGTGCAATTGACGCCACATTGGATCATGCAAATGGGTGGATGGTATCCAAGGAGACAGGGGACATCTACTCCACCAACGAACCTCAATTTGCATTTAACTCAAGAATTGCCTTTTGCCTTAACATGCACAACGATGCAGTGCGTGCCCTTCGGTTTCCCCCTAATTCCCACAAGGAGAAAGAAAGTGCTGAGAAGAGGAGAGAGAGACAACAGCAGGAGCAAGAGCTTGCAAAGCATATTGCTGAGGAGGACGACGATGAGTTCTAA 1464 0.4693 MTQDVEMKELPAPSNSVTSTTPSTLQHLKEIASLIESSAYAREVRRIVRAIRLTMILRRKLKATVLSGFLNYALNPGSEVHTRLSSYLPKEDEHDMEVDTATSATQTPAKHPLPELEIYCYLLVLIFLIDQKKYKEAKACSAASITRLKNLNRRTIDVLASRLYSYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVSALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVAEKFSTTFSSDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLDSANPIADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQFAFNSRIAFCLNMHNDAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDEF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0208 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 5 478 - -
Vvi3g0208 487 Coils Coil 454 481 - -
Vvi3g0208 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Vvi3g0208 487 Gene3D - 246 431 - -
Vvi3g0208 487 Pfam PCI domain 311 416 IPR000717 -
Vvi3g0208 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Vvi3g0208 487 Pfam Proteasome regulatory subunit C-terminal 420 485 IPR013586 GO:0000502|GO:0030234|GO:0042176
Vvi3g0208 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Vvi3g0208 487 MobiDBLite consensus disorder prediction 452 480 - -
Vvi3g0208 487 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g0208 487 SUPERFAMILY "Winged helix" DNA-binding domain 345 421 IPR036390 -
Vvi3g0208 487 MobiDBLite consensus disorder prediction 452 487 - -
Vvi3g0208 487 SMART PCI/PINT associated module 174 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0208 Vvi-Chr3 1802067 1806216 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0208 K03033 - vvi:100264130 895.575