Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0206 ATGAGAATCAATCAACAAGATGGTGTTTCCCAAGTTGATGAACCTAGCACTAGTGTGCATGATAACACTACTTTGGACCAAGGTGATGCGACAGTAAATGGTATTCTTTCTGATTCAAATGCCATTTATGAGAGCAACGAAGCCACCAAAATGCCAGATGTTGCCAAGGAGACTCTTAATATCCCTTGCATTTATAGACAAGACGTTGTTAGGAGCAACGAAGTTGGCATGATAGGAATTGTGTCTGAAGTTGCTGGTGACTCGGATTCGGATAGCAGCATTACTGATGATGAAGAAGAAGAAGATGATGACAACGATGAAGATGAAACTGGTGGAAATGAAGAAGGTGACAACCATGGCAATACCAATGCGAGTAGTGATGGGAATAGAAGTGGTGGTAACTATAAGAGCAGTCCTCTCCCAGATGATCAGGTTCGAGTACTTTGGATGGATGACTCTGAGACAACCGAAAATCTTAATGATGTGACTGTAATTGATAGGGGATTCATGCATGGGGATTATGTTGCTTCTGCTTCAGACCCTACTGGACAAGTAGGTGTTGTGGTGGATGTCAATATCTCCATTGATTTGTTACCCATTGATGGAACTATTATAGAACAAGTCTCATCCAGAGACCTGAAACGTGTAAGGGATTTTGCTGTGGGTGATTATGTAGTTCTTGGGCCCTGGCTGGGTAGAATTGATGATGTGTTGGATAATGTGACTGTGTCATTTGATGATGGTTCCGTGTGTAAAGTTATGAAGGCTGACCCACTGCGTCTTAAACCAGTTACAAAGAATATTCTTGAAGATGGACATTTTCCATACTACCCTGGTCAGCGGGTAAGAGCACGTTCTTCATCAGTTTTCAAGAATTCTAGGTGGCTATCTGGATTGTGGAAAGCTAACCGGTTGGAAGGTACCGTTACTAAAGTTACAGTTGGGTCAGTGTTTATATATTGGATAGCATCTGCTGGCTATGGGCCTGATTCTTCTACCACCCCAGCTGAAGAGCAGAATCCAAAGAATTTAAAACTGCTGTCTTGTTTTGCACATGCAAATTGGCAAGTGGGTGACTGGTGTCTTCTTCCATCATTAGCACTATCATCCTCCATCACCCAGGACAAGGGCCAATCTGAATTAGAACCTCATGATTCTGTCCAAGGAGAATTAGATTCTAGTAAATCAAGAAGCAGGTGTGATCAGGAAGAGGTCTTGCTAGAGGAAGCACATGGTACTGGTGAATCAATGGATCTTGATGCAGTGTCTGCAGTGGATGTAAATAACAGAAATATTGAAGGCAACGCTTCATCACAATCTAGTCCTTGTAGTAGTTCAGTATCCGTTTCAAAGGAACCTGTCCATGAAACTTGGCTTCTTCATCGAAAAAAGATCCGTAAACTTGTTGTTAGGAGAGATAAGAAGACTCGGAAAAAGGAGGACAATTATGAAAAAGCACTTTTGATTGTGAATACAAGGACTAGAGTTGATGTTTCATGGCAAGATGGAACAACAGCACGTGGACTGCCATCAACTACTTTGATTCCAATTGATAGTCCTGGTGATCATGAATTTGTTTCTGAACAGTATGTGGTGGAGAAGGCCTCTGATGAGAGTGATGATGCTTCTGAAGTTAGGCGTGTTGGTGTTGTGAAAAGTGTTAATGCAAAGGAGCGAACAGCTTGTGTGAGGTGGTTAAAGCCAGTTGTCAGGGCCGAAGATCCTCGAGAGTTTGATAGGGAGGAAGTTGTAAGCGTCTATGAGCTTGAGGGGCATCTGGACTATGATTATTGTTATGGGGACGTAGTTGTTCGGTTGTCCCCAGTTTCTGTCTCTGCCCATACGGGTACTGCTGTAGAGGAGGAACCAAAGCAGCAAAGTGGTTCAAATGAGGTTAAACAAGATCTGAACAATAACTCTGGATGTAAGAAAGTGGAGGATGAATCTGCAGATGGAGCTTGTATGGACTTCTCAGATCTCTCTTGGGTTGGGAATATAACTGGTCTTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACGGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAATTGCTGGTGGGAGTGAAGTTAGTGATGATGCTGCTAGTTGGGAAACTGTAAATGATGATGAAATGGATGCCCTTGAGAATGCTAAAGAGGAAATTGGGCTGCCAAATACTGCTGACACTGATCCTGAGACTGAAGAGCACACAACTGTTGAAGATAACAATCCTGGGAGAAATGGGGCATTATCTCTTCCATTAGCTGCCCTGGGGTTTGTTACCAGACTGGCTACTGGCATATTCTCACGGGGAAGGAAACATGTAGAACCACCTTCTTCGGATTCTGAAGGTGAAAATGAACTCCAATCACAAGGAGCAATTAAGCCTTCTCAGATAAAGGTTTCGCATGATGAGACTAACTCTCCAAATAATGTCATTGACAATTTTGGTCTGCAAACTACTCATGAAAAAGAAGAGGAGCATGTTGGGGTTGAGGTTACTGATTCTTTGGATATGGCTGAGGCCTTAGTGAATCTAAGGGCCAACGACCCAGATGCTCTAGCATGCCATGAGTATGAATCGTGCAGTTTCAAACGCTTTGATATTGCTAAAGATCCTTTGGACCATTATTTTATTGGTGCAAGTGGGCAGAATAGCAATGGGAGGAAGTGGCTCAAGAAGGTTCAGCAAGATTGGAGCATCCTTCAGAATAACCTGCCTGATGGGATCTATGTGCGAGTGTATGAAGATCGAATGGATCTCCTAAGGGCTGTGATAGCCGGGGCATATGGAACTCCTTACCAAGATGGTCTCTTCTTCTTTGATTTTCACCTTCCACCAGAGTACCCTGATGTTCCACCGTCAGCATACTATCATTCTGGTGGGTGGCGGATAAACCCAAATCTGTACGAGGAAGGCAAGGTGTGTCTTAGCCTTTTAAACACCTGGACTGGCAGAGGAAATGAAGTATGGGATCCAGTGTCCTCAAGCATCCTTCAAGTCCTAGTTTCACTCCAGGGATTGGTGCTAAACTCGAAGCCATATTTTAATGAAGCCGGCTATGACAAGCAAATAGGGACTGCTGAAGGAGAGAAAAATTCATTGTCCTACAATGAGAACACTTTCTTGCTAAATTGCAAAACTATGATGTATCTCATGCGGAAACCCCCCAAGGTGGCCTTTCTTTCACGGTGCCTGAAGCATAGAGGCTTTTTGGCAAAAAAATAG 3267 0.4334 MRINQQDGVSQVDEPSTSVHDNTTLDQGDATVNGILSDSNAIYESNEATKMPDVAKETLNIPCIYRQDVVRSNEVGMIGIVSEVAGDSDSDSSITDDEEEEDDDNDEDETGGNEEGDNHGNTNASSDGNRSGGNYKSSPLPDDQVRVLWMDDSETTENLNDVTVIDRGFMHGDYVASASDPTGQVGVVVDVNISIDLLPIDGTIIEQVSSRDLKRVRDFAVGDYVVLGPWLGRIDDVLDNVTVSFDDGSVCKVMKADPLRLKPVTKNILEDGHFPYYPGQRVRARSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQNPKNLKLLSCFAHANWQVGDWCLLPSLALSSSITQDKGQSELEPHDSVQGELDSSKSRSRCDQEEVLLEEAHGTGESMDLDAVSAVDVNNRNIEGNASSQSSPCSSSVSVSKEPVHETWLLHRKKIRKLVVRRDKKTRKKEDNYEKALLIVNTRTRVDVSWQDGTTARGLPSTTLIPIDSPGDHEFVSEQYVVEKASDESDDASEVRRVGVVKSVNAKERTACVRWLKPVVRAEDPREFDREEVVSVYELEGHLDYDYCYGDVVVRLSPVSVSAHTGTAVEEEPKQQSGSNEVKQDLNNNSGCKKVEDESADGACMDFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAVYVVGRDDDDESIAGGSEVSDDAASWETVNDDEMDALENAKEEIGLPNTADTDPETEEHTTVEDNNPGRNGALSLPLAALGFVTRLATGIFSRGRKHVEPPSSDSEGENELQSQGAIKPSQIKVSHDETNSPNNVIDNFGLQTTHEKEEEHVGVEVTDSLDMAEALVNLRANDPDALACHEYESCSFKRFDIAKDPLDHYFIGASGQNSNGRKWLKKVQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIAGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPVSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKVAFLSRCLKHRGFLAKK* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0206 1088 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 81 1072 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 374 402 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 732 760 - -
Vvi3g0206 1088 Coils Coil 713 733 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 617 639 - -
Vvi3g0206 1088 CDD UBCc 906 1056 IPR000608 -
Vvi3g0206 1088 SUPERFAMILY UBC-like 887 1070 IPR016135 -
Vvi3g0206 1088 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 903 1063 IPR000608 -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 1 31 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 90 113 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 378 402 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 784 806 - -
Vvi3g0206 1088 Gene3D Ubiquitin Conjugating Enzyme 866 1082 IPR016135 -
Vvi3g0206 1088 SMART ubc_7 906 1063 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 617 645 - -
Vvi3g0206 1088 Pfam Ubiquitin-conjugating enzyme 908 1052 IPR000608 -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 81 142 - -
Vvi3g0206 1088 MobiDBLite consensus disorder prediction 116 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0206 Vvi-Chr3 1787940 1793189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0206 154 364 Miscellaneous Gene Families AT2G33770 38.679 3.55e-50 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0206 K10581 - vvi:100258896 2075.83