Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0200 ATGGCCAAGCCAGTTTCAATTGAGGTTTGGAACCCCTGTGGGAAATACAGAGTTGTCAGCACAAAACCGATGCCGGGAACCCGCTGGATCGATCTATTAGTCCAACAAGATTGTAGAGTTGAAATATGTACCCAGAAGAAAACAATCTTGTCTGTTGAAGATATCATTGCTCTTATTGGTGATAAGTGTGATGGAGTGATTGGACAGTTGACAGAAGATTGGGGGGAGACGCTGTTTTCGGCTTTGAGCAGGGCTGGAGGCAGGGCTTTTAGCAACATGGCTGTTGGATACAACAATGTTGATGTGAATGCTGCTAATAAGTACGGTGTTGCTGTTGGGAACACTCCAGGAGTACTTACAGAGACTACAGCAGAGCTAGCAGCCTCACTTTCTATGGCAGCTGCTCGAAGAATAGTTGAAGCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGTCGTATTGGATCTGCGTATGCTAGAATGATGGTAGAAGGGTTCAAAATGAACCTGATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAAGAGCTGCAAGTATGGATGAGGTGCTCCGAGAGGCTGATCTTATTAGTCTCCATCCAGTATTGGATAAGACCACTTATCATCTAGTCAACAAGGAAAGGCTCTCAATGATGAAGAAGGAAGCGATCCTTATAAACTGCAGCAGAGGGCCTGTGATTGATGAAGTAGCTTTGGTGGCACATCTGAAAGAGAACCCCATGTTTCGAGTTGGACTTGATGTCTTTGAGGATGAACCTTACATGAAACCTGGTCTTGCTGAAATGAAGAACGCGATCGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCATTCCTCAACGAGAACTCCCTGCCCCCAGCTGCATCTCCAAGTATAGTCAATGCAAAAGCCTTAGGTTTGCCTGTTTCAAAGCTATGA 1161 0.4591 MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLISLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFEDEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFLNENSLPPAASPSIVNAKALGLPVSKL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0200 386 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
Vvi3g0200 386 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 168 196 IPR029752 -
Vvi3g0200 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 323 IPR036291 -
Vvi3g0200 386 Gene3D - 18 346 - -
Vvi3g0200 386 FunFam Glycerate dehydrogenase HPR, peroxisomal 118 321 - -
Vvi3g0200 386 Gene3D - 118 321 - -
Vvi3g0200 386 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 17 349 - -
Vvi3g0200 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 30 346 IPR006139 GO:0016616|GO:0051287
Vvi3g0200 386 CDD GDH 16 346 - -
Vvi3g0200 386 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 322 IPR006140 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0200 Vvi-Chr3 1749910 1752847 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0200 K15893 - vvi:100262344 761.911