Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0199 ATGGCTTCTTCAAAGACGATCACTCTCAGAAGCTCTGACGGCGAGGCCTTCGACCTCGAGGAGGTGGTGGCGGTGGAGTCTCAGACGATCAAGCACATGATCGAGGACGGATGCGCCGACAATGCGATTCCGTTGCCGAACGTCACCAGCAAGATCCTTGCAAAGGTGATCGAGTACTGCAAGAAGCACGTTGAAACTCCTAAGGCGGAGGAACACGCCGTCAATGATGAACTCAAGGCCTGGGATGCTGATTTCGTGAAAGTCGATCAGGCCACCCTCTTTGACCTCATCTTGGCAGCAAACTATCTAGATATCAAGAGCCTGTTGGATTTGACCTGCCAAACAGTTGCTGACATGATCAAGGGAAAGACTCCGGAGGAAATTCGCAAGACATTCAACATCAAGAATGACTTCACTCCGGAGGAAGAGGAGGACGTCCGGAGAGAGAACCAATGGGCATTCGAGTAA 468 0.515 MASSKTITLRSSDGEAFDLEEVVAVESQTIKHMIEDGCADNAIPLPNVTSKILAKVIEYCKKHVETPKAEEHAVNDELKAWDADFVKVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEDVRRENQWAFE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0199 155 SUPERFAMILY POZ domain 5 66 IPR011333 -
Vvi3g0199 155 PANTHER SKP1 3 152 IPR016897 GO:0006511
Vvi3g0199 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Vvi3g0199 155 CDD BTB_POZ_SKP1 6 120 - -
Vvi3g0199 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Vvi3g0199 155 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Vvi3g0199 155 FunFam SKP1-like protein 1A 2 155 - -
Vvi3g0199 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Vvi3g0199 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Vvi3g0199 155 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0199 Vvi-Chr3 1746786 1748003 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0199 K03094 - vvi:100252349 275.404